Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1252 |
Symbol | |
ID | 1182888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1374790 |
End bp | 1375452 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392627 |
Product | lipoprotein, putative |
Protein accession | NP_791082 |
Protein GI | 28868463 |
COG category | [S] Function unknown |
COG ID | [COG4380] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACCTCG CTTATCTGAA AGTGGCTGTC AGCCTGTTTG CCGTCGCCCT GTTGTCGGGT TGCGTTACTC CGCCGCCGAC GGTGGACTAC TCGGCCTTCA AGGAAAGCAA GCCGCGTTCG ATTCTGGTGC TGCCGCCGGT CAACGAATCG CCTGACGTCA AAGCGACGTA CAGCACCTTC GCGCAGGTGA CCTATCCGCT GGCCGAGTCA GGTTACTACG TGTTGCCGGT GGCGCTGGTT GACGAGACGT TTCGCAACAA CGGTCTGACC AACGCCAACG ATATTCAGGC CACATCGCCT GCCAAGCTGC GCGAGATCTT CGGCGCCGAT GCCGCGCTGT ACATCACGGT CAAGCAATAC GGCACCAGTT ACGTGGTCAT CAGCAGCCAG ACCGTCGTGA CGGTCACGGC AAAACTGGTT GATCTGCGCA CCGGAACTGC GTTGTGGACA GGCGCCGCTT CCGCTTCCAG TGAAGAGGGA GGCAACAATA GCGGCGGCGG TCTGGTGGGC ATGCTGATCA CCGCAGCGGT CAAGCAGATC ATCAACAGCG CTACCGATGC CGGTGACCCC ATTGCCGGGA TAGCCAGCAA CCGACTGCTT ACAGCGGGTC GGCCGGCGGG TTTGCTGTAC GGCCCGCGTT CGCCGAAGTA CGGCAGTGAC TGA
|
Protein sequence | MNLAYLKVAV SLFAVALLSG CVTPPPTVDY SAFKESKPRS ILVLPPVNES PDVKATYSTF AQVTYPLAES GYYVLPVALV DETFRNNGLT NANDIQATSP AKLREIFGAD AALYITVKQY GTSYVVISSQ TVVTVTAKLV DLRTGTALWT GAASASSEEG GNNSGGGLVG MLITAAVKQI INSATDAGDP IAGIASNRLL TAGRPAGLLY GPRSPKYGSD
|
| |