Gene PSPTO_1221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1221 
Symbol 
ID1182857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp1338122 
End bp1338751 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content46% 
IMG OID637392598 
Producttransporter, LysE family 
Protein accessionNP_791053 
Protein GI28868434 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.360927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTGT CGACACTTAT ATTCTTCTTG CCTGCGTGCT TTGCTTTGAA TCTAGCTCCG 
GGTCCAAACA ATCTCCTCTC AATAAATAAT GCAGCGCATC ATGGTTTCGC GGCTTCTTGC 
TTTGCGGGGC TTGGGAGGCT TGTCGCATTC GCCATAATGA TAGCTCTAGC TTCCGCCGGG 
CTAGCGGCCG TGATCTTTGC ATCCAAAACG ATTTTTATTA CCGTAAAATT GCTAGGTGCT 
GCCTACCTTA TCTACTTGGC GTACAAGTTA TGGGTCAGCG ATGGGAGTGC GATGGATCAA 
AAGGGTGGTG AGTTAGAAGG GAAAATATCA ACGCTAATGC GTCGAGAATT TCTTGTGGCA 
ATTGGAAACC CTAAAGCGAT ATTGATATTT ACTGCGTTCC TGCCTCAATT TGTCGTACCT 
GACGAGGATG TATTCACGCA ATTTATTACT CTTGGAGCTA CATTCTTAGC TCTCGAATGG 
ATCGCTATTG CAATTTATGC ATATTTGGGG CTGCATCTTC AGCGGTGGCT TGCGGGAGTT 
AAGGCAAAAA AAATATTTAA TCGAGTTTGC GGTTCGCTTC TTGGTGGGGC CGGTTTATCT 
TTGCTCGTTG CTAGGCATGC GGGGTTGTAA
 
Protein sequence
MDLSTLIFFL PACFALNLAP GPNNLLSINN AAHHGFAASC FAGLGRLVAF AIMIALASAG 
LAAVIFASKT IFITVKLLGA AYLIYLAYKL WVSDGSAMDQ KGGELEGKIS TLMRREFLVA 
IGNPKAILIF TAFLPQFVVP DEDVFTQFIT LGATFLALEW IAIAIYAYLG LHLQRWLAGV 
KAKKIFNRVC GSLLGGAGLS LLVARHAGL