| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1126 |
|---|
| Symbol | |
|---|
| ID | 1182762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1237927 |
|---|
| End bp | 1238913 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637392505 |
|---|
| Product | amine oxidase, flavin-containing protein |
|---|
| Protein accession | NP_790960 |
|---|
| Protein GI | 28868341 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3380] Predicted NAD/FAD-dependent oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTCC CTATCGCAAT CATCGGTACC GGTATCGCCG GACTTTCAGC AGCTCAGGCG
CTCACAGCGG CCGGGCATCA GGTGCACCTT TTCGACAAGA GCCGCGGCAG CGGCGGTCGG
ATGTCCAGCA AGCGCAGCGA CGCAGGTGCG CTGGACATGG GTGCGCAGTA TTTCACCGCT
CGTGACCGAC GCTTCGCCAC TGCGGTCAAG CAGTGGCAAG CCCAGGGGCA CGTTGCCGAG
TGGACACCCC TGCTTTACAA CTTCCACGCT GGCAGGCTCA GCCCGTCGCC GGATGAACAG
GTGCGCTGGG TCGGCAAGCC CGGCATGAGC GCGATTACCC GTGCCATGCG CGGCGACATG
CCGGTGTCAT TCTCGTGCCG CATCACCGAG GTGTTTCGCG GCGAAGAGCA CTGGAACCTG
CTGGACGCCG AGGGCCAAAA TCACGGCCCG TTCAGCCATG TCATCATCGC CACCCCTGCC
CCGCAGGCCA GCACACTGCT GGCTGCCGCA CCCAAGCTGG CCAGCGTGGT GGCGGGCGTC
AAGATGGACC CGACCTGGGC GGTTGCACTG GCCTTCGAGA CCCCGTTGCA AACCCCCATG
CAGGGTTGCT TCGTGCAGGA CAGTCCGCTC GACTGGCTGG CCCGCAACCG CAGCAAGCCG
GAACGCGACG ACACGCTCGA TACCTGGATT CTGCACGCCA CCAGTCAATG GAGCAGGCAA
AACCTTGATG CATCCCGTGA ACAGGTCATC GAGCACTTGC ACGGTGCTTT TGCAGAGCTG
ATCGACTGCA CCATGCCCGC CCCGGTGTTC AGCCTGGCGC ATCGCTGGTT GTACGCGCGG
CCTGCCGGCG CTCATGAATG GGGCGCGCTG TCGGATGCCG ATCTGGGTAT TTACGTGTGC
GGCGACTGGT GCCTGTCGGG GCGTGTGGAA GGCGCATGGC TGAGCGGCCA GGAAGCGGCA
CGTCGGCTGC TGGAACACCT TCAATGA
|
|---|
| Protein sequence | MTVPIAIIGT GIAGLSAAQA LTAAGHQVHL FDKSRGSGGR MSSKRSDAGA LDMGAQYFTA
RDRRFATAVK QWQAQGHVAE WTPLLYNFHA GRLSPSPDEQ VRWVGKPGMS AITRAMRGDM
PVSFSCRITE VFRGEEHWNL LDAEGQNHGP FSHVIIATPA PQASTLLAAA PKLASVVAGV
KMDPTWAVAL AFETPLQTPM QGCFVQDSPL DWLARNRSKP ERDDTLDTWI LHATSQWSRQ
NLDASREQVI EHLHGAFAEL IDCTMPAPVF SLAHRWLYAR PAGAHEWGAL SDADLGIYVC
GDWCLSGRVE GAWLSGQEAA RRLLEHLQ
|
|---|
| |