Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1024 |
Symbol | |
ID | 1182658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1117166 |
End bp | 1118434 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392403 |
Product | phospholipase D family protein |
Protein accession | NP_790860 |
Protein GI | 28868241 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACTTCT CTATCTGGTT TCGCTCGACG TCCATACGCT ACCGCAGCCT GATTGCCGCA TTGCTGCTCA GCAGTCCGGT TGCCTATGCA GATTTCGCCA TTCCCGGTTT CGACCTGGTG CACACCGTGC CCGTCGGGAC CGACCTGCAA ACCCCGGACC TGCGAGCGCC TGGCGATGTC TGGCGCGAGC TGTTCGATGG GGCTCGCGAG CGTATCGATA TCGAACAGTT TTATGTGGCA GATCAGCCAG GCTCGGTGAT GGGCAAGGTG CTTGAAAGCC TGACCGCAGC GGGGCAGCGC GGGGTAAACA TCCGTTTTCT GCTGGAAGAG AAAGGCTTGA AGCTTTCCGA TCCAGAGACC CTTGAACGCT TGCGGGCGAT CCCCAACCTC ACCTTGCGGG TGCTGCCTTA CGCCAGGCTG ACCGGCAGTG GCATCATCCA CGCCAAGTTT TTCGTGGTGG ATGGCAAGCA GGCATTTATC GGCAGTCAGA ACTTCGATTG GCGTTCACTG GAACATATTC ACGAAACCGG TTTGCGTATT GACGAGCCCA CGGTCGTGCG ACAGACGCAG GCTGTGTTCG ATCAGGACTG GCTTGCCCAG GCGGCCATTG CCGACGGCAA ACCTGTGCCG GTTGCTGTTT CTGGTGCGCC GCCTGCCAGC GGCGCATCGC CCGGTGGCAA TTATCTGGTC GCCAGCCCAC AGCGCTATAA CCCGTCGGGC GTGCGCGACT CCGAGACCGA ACTGCCGCGT TTGCTGGCGC AAGCCAAAAG CGAGGTTCGT GTCCAGTTGC TGGACTACGC ACCGCTGTCC TATGGGCCTG ATAAAACCCG GCCGTATTAC GCGGTCATCG ACAACGCCCT GCGCAGCGCC GCCGCCCGTG GCGTGTCGGT CAAACTCATG GTTTCAGACT GGAACACCGG CATGCCCGAG GTCGCCTATC TGAAAAGTCT GGCTCTGGTG CCCAACATAC AAATACGCAT CGTGACGTTG CCAATGGCCG CTCAGGGTTT CATCCCCTAC GCACGGGTGA TCCACAGCAA AACCATGGCG ATTGATGACC AGGTCGCCTG GGTCGGCACC AGCAACTGGC TCGGCGGCTA CCTCGACAAC TCGCGCAACC TGGAAGTGGT GATGCACGAC AGCACGATGG CCAGGCGCAT CGGCCAGTTG CATGCACAGC TCTGGGAGGG GCCGTATGCC AAGCCCATCG ACATCAATCG CGACTACCCG CAACCGCATC CGGGAAGTTT GAATGCAGCT CCCCACTAG
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Protein sequence | MHFSIWFRST SIRYRSLIAA LLLSSPVAYA DFAIPGFDLV HTVPVGTDLQ TPDLRAPGDV WRELFDGARE RIDIEQFYVA DQPGSVMGKV LESLTAAGQR GVNIRFLLEE KGLKLSDPET LERLRAIPNL TLRVLPYARL TGSGIIHAKF FVVDGKQAFI GSQNFDWRSL EHIHETGLRI DEPTVVRQTQ AVFDQDWLAQ AAIADGKPVP VAVSGAPPAS GASPGGNYLV ASPQRYNPSG VRDSETELPR LLAQAKSEVR VQLLDYAPLS YGPDKTRPYY AVIDNALRSA AARGVSVKLM VSDWNTGMPE VAYLKSLALV PNIQIRIVTL PMAAQGFIPY ARVIHSKTMA IDDQVAWVGT SNWLGGYLDN SRNLEVVMHD STMARRIGQL HAQLWEGPYA KPIDINRDYP QPHPGSLNAA PH
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