| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1005 |
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| Symbol | gmd |
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| ID | 1182639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1098690 |
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| End bp | 1099736 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637392386 |
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| Product | GDP-mannose 4,6-dehydratase |
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| Protein accession | NP_790843 |
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| Protein GI | 28868224 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1089] GDP-D-mannose dehydratase |
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| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.403291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCAC CGCAAGAATC GGTAATTATC ACTGGTATCA CGGGCCAGGA TGGCGCGTAC
CTTACTCAGT TGCTGCTGGA AAAGGGCTAC AAGGTTTACG GGACGTTCCG TCGTACCAGC
TCGGTCAACT TCTGGCGTCT TGAAGAACTC GGCGTCGCCA GACACCCGAA TTTGCATCTG
GTTGAGCATG ATCTGACGGA TTTGAGCGCC AGCATTCGCT TGGTGCAGAA AGCCGAACCC
ACTCAGATTT ACAACCTGGC CGCATTGAGC TTTGTCGGTG TTTCCTTCGA TCAGCCCATA
ACAACTGCTG AAATCACAGG GCTGGGCGCC GTCAACCTGC TTGAAGCGAT ACGGATCGTA
AACCCGAAAA TACGCTTTTA TCAGGCATCC ACCTCTGAAA TGTTCGGCAA GGTGCAGGAG
GTTCCTCAGG TTGAAACGAC TTCGTTCTAT CCGCGTAGCC CATACGGTGT CGCCAAGTTG
TATGCGCACT GGATGACCAT CAATTATCGG GAGTCCTACG GTATTTTTGG CGCCAGCGGC
ATTCTGTTCA ATCACGAGTC GCCTCTGCGC GGTAAAGAGT TTGTAACCCG GAAGATCACC
GACGCAGCTG CTCGAATCTC ACTGGGCCTG CCGCACGTTC TGGAGTTGGG TAATCTGGAC
GCACGGCGTG ACTGGGGGTT TGCCAAAGAG TATGTCGAAG GTATGTGGCG CATGCTGCAA
GCCGAAGAGC CCGACTCCTT CGTTCTGGCA ACCAACCGAT CCGAAACGGT TCGTGACTTT
GTATCCATGG CTTTCAAGGC TGTCGACATT AACCTTGAGT GGGTGGGCAG CGCGGAAAAT
GAGCGGGGCA TTGACGTGAG TACAGGCAAG TCCCTTGTGC AGATCAATCC GAAGTTCTAT
CGCCCCTCTG AAGTCGAGTT GCTGATCGGC AATCCTGAAA AAGCCAGAAA CGTGCTCGGG
TGGGAGGCCA AAACCGGCCT TGAGGAGCTT TGTCGATTGA TGGTTGAGGC TGACCTGAGG
CGCAACAAGA ACGGCACCTC GTTCTGA
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| Protein sequence | MSAPQESVII TGITGQDGAY LTQLLLEKGY KVYGTFRRTS SVNFWRLEEL GVARHPNLHL
VEHDLTDLSA SIRLVQKAEP TQIYNLAALS FVGVSFDQPI TTAEITGLGA VNLLEAIRIV
NPKIRFYQAS TSEMFGKVQE VPQVETTSFY PRSPYGVAKL YAHWMTINYR ESYGIFGASG
ILFNHESPLR GKEFVTRKIT DAAARISLGL PHVLELGNLD ARRDWGFAKE YVEGMWRMLQ
AEEPDSFVLA TNRSETVRDF VSMAFKAVDI NLEWVGSAEN ERGIDVSTGK SLVQINPKFY
RPSEVELLIG NPEKARNVLG WEAKTGLEEL CRLMVEADLR RNKNGTSF
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