| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0999 |
|---|
| Symbol | |
|---|
| ID | 1182633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1090603 |
|---|
| End bp | 1091826 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637392381 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | NP_790838 |
|---|
| Protein GI | 28868219 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.196023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATCACTT CACCTCCCAA TGAACAAACC GGTGAGCACA CCGGCAGCTG GCTGGGCGTT
TTCGCGCTGG CCCTGGCGGC CTTTATTTTC AACACCACCG AGTTTGTGCC GATCGGCTTG
CTGAGCAACA TCGGCCAGAG CTTCGACATG ACGCCGGCAC AAGTCGGTTT GATGCTGACG
ATCTACGCCT GGGTCGTCTC GCTGATGTCG CTGCCCATGA TGCTGGCGAC GCGCAACATT
GAGCGCCGCA AACTGTTGAT GTTTGTGTTC GGCCTGTTTG TGGTCAGCCA CGTCATCTCT
GCGATGGCGT CCAGCTTCGC GATTCTGCTG GTGAGCCGTG TCGGCATTGC GTTTGCGCAT
GCGGTGTTCT GGTCGGTCAC GGCCTCCCTT GCCGTGCGCA TCGCACCGCC GGGCAAGCAG
GTTCAAGCCC TTGGTTTGCT GGCGACCGGC ACTTCGCTGG CGATGGTTCT GGGTATTCCG
CTGGGACGTG TGCTGGGTGA AGCCCTGGGT TGGCGCACCA CATTCCTCGG TATCGCCGGG
GTCGCTGCGC TGGTGGTCTT TCTGCTGGCG CGCGCGCTGC CGTTGCTGCC GAGCCAGAAC
TCCGGCTCGC TGCGCAGCCT GCCTATCCTG TTCAAACGCC CGCGCCTGAT GGCCATCTAC
CTGTTGACTG CCATCGTGGT GACTGCGCAC TTCACCGCCT ACAGCTACAT CGAGCCGTTC
ACGCAAACCG TGTCGCGCCT CAGCGGTGAA ATGACCACCA TCTTGCTGCT GGTCTTCGGC
GGTGCCGGAA TCATGGGCTC GATTGTGTTC AGCCTGTTCA GCGACCGGTT TCCAAACGGT
CTGTTGATCA CTGCCATTGG CACCCTGGCG GTCTGCTTGC TGATGCTGTT GCCACTGTCT
GGCGACGCAA CAATGCTCGG CACGCTGACC GTGGTCTGGG GGATGGCGAT CATGTGCTTC
GGGCTGTTGC TGCAGGCGCG CGTGCTGTCG CTGGCACCGG ATGCGACCGA CGTGGCGATG
GCGCTGTTTT CCGGGATATT CAACATCGGC ATTGGCGGCG GTGCCTTGCT GGGCAGCGTC
GTCAGCAGCC ACCTGGGCGT GGCGAATGTC GGCATTGTAG GCGGCCTGTT GGCCCTTGGC
GGGTTGGGGC TGATTTGCTA TACGACGTTT CTATTCGGCA AGACGCAGCC CCATGCAGAG
ATGCAGGCTG ACGCTAAACA CTGA
|
|---|
| Protein sequence | MITSPPNEQT GEHTGSWLGV FALALAAFIF NTTEFVPIGL LSNIGQSFDM TPAQVGLMLT
IYAWVVSLMS LPMMLATRNI ERRKLLMFVF GLFVVSHVIS AMASSFAILL VSRVGIAFAH
AVFWSVTASL AVRIAPPGKQ VQALGLLATG TSLAMVLGIP LGRVLGEALG WRTTFLGIAG
VAALVVFLLA RALPLLPSQN SGSLRSLPIL FKRPRLMAIY LLTAIVVTAH FTAYSYIEPF
TQTVSRLSGE MTTILLLVFG GAGIMGSIVF SLFSDRFPNG LLITAIGTLA VCLLMLLPLS
GDATMLGTLT VVWGMAIMCF GLLLQARVLS LAPDATDVAM ALFSGIFNIG IGGGALLGSV
VSSHLGVANV GIVGGLLALG GLGLICYTTF LFGKTQPHAE MQADAKH
|
|---|
| |