Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0875 |
Symbol | |
ID | 1182504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 944512 |
End bp | 945756 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637392251 |
Product | hypothetical protein |
Protein accession | NP_790714 |
Protein GI | 28868095 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0439] Biotin carboxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAAAA ATAAGCCAAA CACTATTCTG ATCGTCTCTT CCGAACTGGA TGTAAGCGAG GTGGTCTCCC GAATCAGGAG TCTCTACCCG ATCGATGCCT GGACGTTCAT CTACCTTCTG GAGGATCTTC TGGGGCAGGC GGGAGAGGCG CTGAATCGCG ATGGACACTT TGTGATCCGA GACTTTGCCG TTCACACCGA GGTCGAAAAG GTATTCGGCC AGATTGCAAG GAAATATTCC GTCACCGCCG TCATTCCGAA TGACGAGTTC GCGGTATACA TTGCTGCATG GGCCAACGAC TGTTGGCAGC TGCCTGGATT GACTTTTGAC GTGGCGACAC GGTTTCGTGA TAAAAGGCGA ATGAAAAAAA TTGCCCAAAA GTTTAATATC CCGACAGCAA AAGAACTATC GCTTGATGAT ATTAACCGTG GAGGGGCGAC GTTTCCGGTT ATTTTGAAAC CTCGGTCTCT GGCGGGATCT GTAGGGGTCA GAATCATTAC TGAGGTCCAG CAACTTTCTG AGGCATATGC CACCGAAATT GATGACTATC AGGATATGAA TGAGCACCAG TATCTTATTG AAACTTACAA CTCACAACCC CTTTATCAAA TTGATGCTGT GGTTCTAAAA GGGCAGCTGG CGTTCCTGTC TGCAGGTAAG TACCTAGGTA AACCCATCGA TTATCTGGCC GAATGTCCAC TGGGATATTT TTCACTTGCT GAAGACGATC TACACACCCT ATGGCGTCCA TTCATCGAGC GAGTGTTGTC CGCTTTTGAA GGGCCTGATG GTGTTTACCA TATTGAAGCG TTTGGTGATG CGGGCGACGG ATTTGAATTA CTTGAGATTG CCTATCGGCC CGGTGGGGCT TCCACTGTCG ATATGATAAA AATCGCTTAT GGAATAGACC TGCGTTTCAT TCATCTTGCC GTCCAGTTAG GGCTTGTCGA TGCCTTGCAC GTTGACCGTA AGGGCGAGGC CTTTGGCTAT ATGACGTTCC CTAAAAAACA CTTGGCCAAA GAAATGCTTT ATGTCACTCG GGTTTCACTG TCGAGTATGG AAACCCTGCA AACACTGAAG ATGAAGAAAA TTGCGCAGGT AGGCGATATC GCTTCAGGTG AATTTTTCTG CCACAAGGAT TGTTTGGGGG CCTTTGTATT CTGTGGCGAT CGAGGCAGCG TCGCTCATGA CTTGAAGCAT GTTGAGGAGC ATTATCAAGT GCATGCAGAA GCTGCGCGTG GTTGA
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Protein sequence | MDKNKPNTIL IVSSELDVSE VVSRIRSLYP IDAWTFIYLL EDLLGQAGEA LNRDGHFVIR DFAVHTEVEK VFGQIARKYS VTAVIPNDEF AVYIAAWAND CWQLPGLTFD VATRFRDKRR MKKIAQKFNI PTAKELSLDD INRGGATFPV ILKPRSLAGS VGVRIITEVQ QLSEAYATEI DDYQDMNEHQ YLIETYNSQP LYQIDAVVLK GQLAFLSAGK YLGKPIDYLA ECPLGYFSLA EDDLHTLWRP FIERVLSAFE GPDGVYHIEA FGDAGDGFEL LEIAYRPGGA STVDMIKIAY GIDLRFIHLA VQLGLVDALH VDRKGEAFGY MTFPKKHLAK EMLYVTRVSL SSMETLQTLK MKKIAQVGDI ASGEFFCHKD CLGAFVFCGD RGSVAHDLKH VEEHYQVHAE AARG
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