| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0531 |
|---|
| Symbol | |
|---|
| ID | 1182140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 580669 |
|---|
| End bp | 581433 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637391898 |
|---|
| Product | type IV secretion system protein, putative |
|---|
| Protein accession | NP_790379 |
|---|
| Protein GI | 28867760 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGT TTAAGTGTCT GGCTCGTATG GGCAAGCAAC CGCTTCGTAT TACTGCCGCA
TTTTCATCGT TGATGTGCGC GCAGCAGGGT TTTGCACAAA TTCCTGTAAC CGTTACCAGC
CAGGTAACCG AATCCCCGAT GACTATCGCT GAGTTTGCTT CCAACTCCAC CCGTTGGGGT
CAGCAGGTTC AACAGATGGC TTCTCAGATT GACCAGATGA AGCAGCAGTA CGGAGCGATC
ACAGGCTCGC GAGGACTCGG AAGAGTGTTC GATGATCCTC AGCTCCGAGA GTATCTGCCT
CAAGAATGGC AAGCGGTCTA TGACTCAGTG AAAAGCGGCG GATATTCAGG CCTGGATGGC
CGTGCCGAGA TGATCTATGC AGATAACAAG GTGTTCGATG CATGCCAAAG TTTCGCTCAG
GATGAGCAAC GGGCTGCCTG TCAGGCGCAG GCTGTAAAGC CATCGCAGGA CAAAGCGTTC
GCATTGGACG CCTATGATCA AGCCAAGGGT AGGCTGCGTC AGCTTGATCA GCTCATGGGG
CAAATTGATA AAACCCAAGA TCCCAAAGGC ATCGCCGAGT TACAGGGGCG CATTGCTGCA
GAGCAAGCAA TGATTCAAAA CGAGCAGACC AAGTTGCAGA TGTTCCAAAT GGTGGCTCAG
GCAGAGGACA AGGTACAGGA GCAGAGGCAG CGTGAATTGA ATGCCCAGAT TCTTGATAAG
CGAGGATTCA AGACTCGCAC CATGCTGAAC CTGGGGGGAA ATTGA
|
|---|
| Protein sequence | MDLFKCLARM GKQPLRITAA FSSLMCAQQG FAQIPVTVTS QVTESPMTIA EFASNSTRWG
QQVQQMASQI DQMKQQYGAI TGSRGLGRVF DDPQLREYLP QEWQAVYDSV KSGGYSGLDG
RAEMIYADNK VFDACQSFAQ DEQRAACQAQ AVKPSQDKAF ALDAYDQAKG RLRQLDQLMG
QIDKTQDPKG IAELQGRIAA EQAMIQNEQT KLQMFQMVAQ AEDKVQEQRQ RELNAQILDK
RGFKTRTMLN LGGN
|
|---|
| |