| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0209 |
|---|
| Symbol | lsyA-1 |
|---|
| ID | 1181817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 234287 |
|---|
| End bp | 235525 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637391578 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | NP_790060 |
|---|
| Protein GI | 28867441 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0158356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC TCGCTGACAG CCAGCTGTCC AGACTGGCCG ATCAATACGG CACTCCGCTA
TGGGTGTACG ACGGCCAATT GATTAAAAAG CGTGTTCAGC AACTGGCTGC ATTCGACACA
GTGCGCTTTG CGCAAAAAGC CTGTTCCAAC CTTCATATCC TGCGCCTGTT GCGCGACGCT
GGCGCGGCGG TGGATGCCGT CTCACTGGGG GAACTGGAGC GCGCCCTGCA CGCAGGCTTC
AGCGCCCAAA CCACTCAGGG CGCGGCCGGT GTCGTGTTCA CTGCCGATGT GTTTGACCGA
GCCACCCTGC AGCGCGTGGT CGAGGCACAG GTCGAGGTGA ATGTCGGCTC GATCGACATG
CTGCATCAAC TGGGCGCGCT TTCCCCCGGC CACCGTGTAT GGCTGCGAAT CAACCCGGGC
TTTGGCCACG GCCACAGCCG CAAGACCAAC ACCGGCGGCG AAAACAGCAA GCACGGCATC
TGGCATACGC ACCTGCAGGA TGCGCTGACG CTCGTCCACT ATTACCGGCT GCATCTGGTC
GGCCTGCATA TGCACATCGG CTCGGGGGTC GATTACCAAC ACCTCCAGCA GGTCTGCAGC
ACCATGGCAG AACTGGTTGT TGAAATGGAC CACGATATTG AAGCCATCTC GGCAGGTGGC
GGTTTATCAG TGCCCTATCG CGCAGGCGAA CTGCCGATCA ATACCAGCCA CTATTTCGCT
CAGTGGGACC ACGCCAGAAA ACGCATCGAA GCCCATCTCG GGCACCCGAT ACGTCTGGAA
ATCGAGCCCG GCCGTTTTCT GGTCGCGCAG GCCGGTGTGC TGGTGTCCGA GGTCCGTGCT
ACCAAGCACA TGGGCGGCAA GCACTTCACG CTGGTCGATG CAGGGTTCAA CGACCTGATG
CGTCCTTCGC TGTATGGCAG CTATCACGAG ATGTCCCTGA TCACCTCGCG CGACGAACCG
CTGCCGATGC AGGAAACAGT TGTAGCGGGG CCACTGTGCG AGTCTGGAGA TGTGTTCACG
CAGGCCGAAG GCGGGATCGT CGAGTCCCGT CTACTGCCCG TCGCGCAGGT GGGCGACTAC
CTGGTTTTTC ATGATGCAGG GGCTTATGGC GCGTCCATGT CTTCCAACTA CAACAGCCGC
ACCCACGCGG CAGAAGTGTT GGTTGATGAC GGGCAGGAAC GATTAATCAG ACGGCGTCAG
CCACTGGATG ATCTGTTGCG ACTTGAAGAA GACTGTTAA
|
|---|
| Protein sequence | MKTLADSQLS RLADQYGTPL WVYDGQLIKK RVQQLAAFDT VRFAQKACSN LHILRLLRDA
GAAVDAVSLG ELERALHAGF SAQTTQGAAG VVFTADVFDR ATLQRVVEAQ VEVNVGSIDM
LHQLGALSPG HRVWLRINPG FGHGHSRKTN TGGENSKHGI WHTHLQDALT LVHYYRLHLV
GLHMHIGSGV DYQHLQQVCS TMAELVVEMD HDIEAISAGG GLSVPYRAGE LPINTSHYFA
QWDHARKRIE AHLGHPIRLE IEPGRFLVAQ AGVLVSEVRA TKHMGGKHFT LVDAGFNDLM
RPSLYGSYHE MSLITSRDEP LPMQETVVAG PLCESGDVFT QAEGGIVESR LLPVAQVGDY
LVFHDAGAYG ASMSSNYNSR THAAEVLVDD GQERLIRRRQ PLDDLLRLEE DC
|
|---|
| |