| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTOA0060 |
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| Symbol | traU-2 |
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| ID | 1187350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004633 |
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| Strand | + |
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| Start bp | 58596 |
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| End bp | 61643 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637408393 |
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| Product | traU protein |
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| Protein accession | NP_808718 |
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| Protein GI | 29171534 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCGTT GGGTTGAAGA CCTGATCACA GAAACCTCCC GGTTTGCCGT ATCACGCGAT
CTGCCCGACT ATTGCGACTT GAACACGGTA CTGCGTCTGA CGGACGACGA TCGCACTCGC
CACCCAGCCC TCAATGCCCC GTATGTACTG GTCAACGACG ATGGCGATTA CTGCTCGGTG
TATGCCGTTG CCGGCAGTTT TTGTGACACC GACGAAGCGG CACCCCTGGA GGCCCCTTAT
TCCTGGGCCG GCCGCTTGGA GCGCATGATG CATGCGCTGA CAGCCCACTA TCGCCGACAT
GGGCACAAAA TCAGCCTGGT GTTCGACGAT GACCCTGATC GAGGCCGCGA GGACGTCGAA
CGCCTGCTGG CCCCTCAGTA CGCTTCTGTC AAACGGACCG GCATCGACTT GACGCCGATC
CTGGACGAAA ACGTTGAAAA GCTGGCCCCC TGGGTCTCTC GCGAACGCTG CTACCTGGTG
TGTTACACCG GACGCAAGGC GCTCTCTGCG CATGAACTGA TCGACGAAAA TCGCCGTATC
AAGCAATTGA TCGGGCAAAG CCCGGATGCA CGGTTTGGAC AAAATCCGGT CCTGGCTGAA
ATGGCCGGCC TGAAAATTCG CCACGACGCC TTCATGAGCG CTGTGGAAGC TGCCTTTAAA
GATGATGGCC AGGGTGTGCT GCTGGAACTG CTCGATGCCC ATGCAGTGGG CCAGGCGCTG
CGCTCTCAAG TGGACCGGCT CGGTACCAGT GAGCATTGGT ACCCGCTGCT CCCTGATGAT
CCGATCACCC CGCATGGTGT GCGTAACGGC GACGATCACA CACCGTTTCT GGCCCCGCAG
CTGAAATTCC AGCTGATGAA CCAGGACATG GAAACCAACG GCAGCAAGCT CTGCGTCAAT
GGGATGTGGC ATGGCACCTT GTCTGTCGTC CTGGGACCGC AGACGCCGCA GACCTTTGCC
AAGCTCAAGG CGCTGGTCCC TCGCGGCGTG CCTTGGCGCG TACGCATGGA CCTGATGCCT
GGGGGCATGA AGTCGCTAGG CATGAAAAAA GGCACGTTGG ACTTCATGGC GTTTGTGCCG
CCGCTTCGGC CCATCTGGAA CTCCATCGAA ACGTTGACAA AGGTTGAGCA ACAAGAGCCG
GTATGCGTCA TGACGATCAT GGCCTCCACC TGGGGTGACA GCCAGGCCGC AGTGACGCGC
CATCTGACGC TGCTGACCCA GGCCTTTCAG GCATGGGGAG TGTGCGAGGT GACGCAAACC
TTCGGCAACC CGGTACGCGC ATGGGCCTCG ACGCTGGTGG CTTCCAGCAA AGGCAGTGGC
CCGAACCTGT TGTATCCGCC GCTTTCAGAG GCGCTGAACC TGTTGCCGCT GACCCGCCCG
GCCTCGGCTT GGGAGGAAGA CGGCAACGCC TTGTTCGCTA CGCTCGATGG CAAGCTCTAT
CCGGTCGGTC TGGCCACCCC CAAGCAGAAC AAGCTCACCA GTGTGGTCAC CGGCTCTTCC
GGCCAGGGCA AGTCGGTGCT GCTGAACAAG CTGGGCAATG TCACGGTGTC CAGCGCCCAG
CAGCGATTAC CGTTCATGGC GGGGGTGGAC AAAGGTTTCT CGATGCAAGG TCAAGTCGCC
TTGCTGCGCG ACAGTCTGCC GCCGGAGCGC AAGGACGAGG TCGTGGGCAT TGTGCTGCAG
AACAGCCCCA AGCATTGCCG GAACCTGTTC GATATCCAGC TGGGCGCGCG GTTTCCGATC
GCCCCCGAGC GTAACTGGAT CATCAGCATG CTCACGGCCA TGTGCATTGA CCCCTCTACC
GGCAATCCGC CAAACGAACG CGATACCCGG CAGATACTGG ACCGCGTCAT CAGCATGGCC
TATACCGCCA ATGCCGAAAA AAGCCCCAGA GCCTGGGCGC GCGGGGTCGT CCCCGAAGTG
GACACTGCCT TGGATAAAAG CGGGTTGATC GAGCGCTATC CGGCCCAGTG GTGGGATAGC
AGTACCTGGT ATGAGGTGCG CGATCTGTTG TTTGAAGCAG GCTTTGTTAA GGAAGCGCAG
CTGGCCCAGT TCGAAGCAGT GCCGGAACTG GCCGACATGA CCACCTTCCT GAACCATGAA
GACGTAGAAA GCGCCTATGG TCGGGTGCAA CGTGATGGCA GTCAGGAGCT GTTGCTGGAG
TACTTGCACC GCTGCATGAC TGACGCCTGT AGAGAATTCA AGATGCTGGC CGGGCGTACG
CAGTTCTTGA TCAGTCCACG CACGCGAGTG ATCGCGATCG ATCTGAACAA TGTCATGGGT
GATAACACCA CCAATGCTGG CCACCTGAAA ACCGGAATCA TGTTCCTGTT TGCGGGCCAG
GTGGCTGGGG GCGATTTTGT GTTGCCTCAG TACAGGGATG AGCTGTTGGA GGCGGTGCCC
ACGCTTTACC ACCCCATGCA TCTCGACCGC TTGGAGCAAC TGGATCAGGA GGTCAAAACC
AAGGTCTACG ACGAGCTGCA CAATGCGAAA CAGGTGCCCT TCATCTTTCC CATGCTGGAA
ACCCAGGATC GTGAGCAACG CAAATTCGGC ATACGCACGG TGTTGTCCTC GCAGTACGTG
AGCGACTTTC CCGACGCCAT TCTGAATTCG GCCAACTCGC TGTACATGAT GGAGGTGGAC
CCCAAGGACG AGAAGCTTCT GACCGACACC ATCAAAGTGC CCAAGGTCAC TCTGCAGCGC
TTTCAGCGTT TAGGCTCAGG TCCAGCAGCG GATGGCAGCG GCGTACCGTT TTTGGGCGTG
TTCCGAATCA AGGGTGGCGG CACCCTGGCG CGCATTCTGA AAAACGCCAT GGGGCCCCTG
GAACTATGGG CGTTGGGCTC TTCACCGACC GACAGCGCCC TGCGCAGGTT GTTGTATGAA
GCGGTCGGCG GTTCCACGGC TCGCGCCATC CTGGCCGAAG CCTTTCCCCA GGGCACGGCA
GAAAAACTCA TCGCGCTGCG CCAGAAGCAA GCCGGTGAAG TGGATTCCAA CAACGTGATT
CGCACGCTGG CCAACGAGTT GATCAAACGG CGTGGTTACA ACCTCTAG
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| Protein sequence | MIRWVEDLIT ETSRFAVSRD LPDYCDLNTV LRLTDDDRTR HPALNAPYVL VNDDGDYCSV
YAVAGSFCDT DEAAPLEAPY SWAGRLERMM HALTAHYRRH GHKISLVFDD DPDRGREDVE
RLLAPQYASV KRTGIDLTPI LDENVEKLAP WVSRERCYLV CYTGRKALSA HELIDENRRI
KQLIGQSPDA RFGQNPVLAE MAGLKIRHDA FMSAVEAAFK DDGQGVLLEL LDAHAVGQAL
RSQVDRLGTS EHWYPLLPDD PITPHGVRNG DDHTPFLAPQ LKFQLMNQDM ETNGSKLCVN
GMWHGTLSVV LGPQTPQTFA KLKALVPRGV PWRVRMDLMP GGMKSLGMKK GTLDFMAFVP
PLRPIWNSIE TLTKVEQQEP VCVMTIMAST WGDSQAAVTR HLTLLTQAFQ AWGVCEVTQT
FGNPVRAWAS TLVASSKGSG PNLLYPPLSE ALNLLPLTRP ASAWEEDGNA LFATLDGKLY
PVGLATPKQN KLTSVVTGSS GQGKSVLLNK LGNVTVSSAQ QRLPFMAGVD KGFSMQGQVA
LLRDSLPPER KDEVVGIVLQ NSPKHCRNLF DIQLGARFPI APERNWIISM LTAMCIDPST
GNPPNERDTR QILDRVISMA YTANAEKSPR AWARGVVPEV DTALDKSGLI ERYPAQWWDS
STWYEVRDLL FEAGFVKEAQ LAQFEAVPEL ADMTTFLNHE DVESAYGRVQ RDGSQELLLE
YLHRCMTDAC REFKMLAGRT QFLISPRTRV IAIDLNNVMG DNTTNAGHLK TGIMFLFAGQ
VAGGDFVLPQ YRDELLEAVP TLYHPMHLDR LEQLDQEVKT KVYDELHNAK QVPFIFPMLE
TQDREQRKFG IRTVLSSQYV SDFPDAILNS ANSLYMMEVD PKDEKLLTDT IKVPKVTLQR
FQRLGSGPAA DGSGVPFLGV FRIKGGGTLA RILKNAMGPL ELWALGSSPT DSALRRLLYE
AVGGSTARAI LAEAFPQGTA EKLIALRQKQ AGEVDSNNVI RTLANELIKR RGYNL
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