Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0018 |
Symbol | hopO1-1 |
ID | 1187367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | + |
Start bp | 20399 |
End bp | 21250 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637408352 |
Product | type III effector HopO1-1 |
Protein accession | NP_808677 |
Protein GI | 29171493 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 0.0402217 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAATA TTTGTGGTAC TTCTGGCTCC AATCATGTGT ATAGTCCGCC TATTAGCCCT CAACATGCAT CTGGTTCGTC CACACCAGTG CCCAGTGCTT CTGGGACGAT GCTTTCTCTC AGTCATGAAC AAATATTAAG CCAGAACTAT GCTAGCAATA TAAAGGGGAA ATATCGCACG AACCCCCGAA AAGGACCATC TCCTAGGCTT TCTGATACGC TGATGAAGCA GGCGCTGTCT TCAGTGATCA CACAAGAGAA AAAGCGACTT AAAAGTCAAC CAAAGTCAAT AGCCCAAGAT ATTCAGCCTC CAAACAGCAT GATCAAAAAT GCACTTGATG AAAAAGACAG CCACCCTTTT GGTGATTGCT TTTCAGACGA TGAATTTCTT GCGATCCATC TCTATACGAG TTGTCTTTAC AGACCGATCA ACCATCATCT GCGGTATGCC CCGAAAAATG ATGTCGCGCC TGTTGTCGAG GCAATGAATA GCGGTTTGGC CAAACTTGCT CAATACCCTG ATTATCAGGT GTCTGGTCAG CTGCATAGAG GCATCAAGCA AAAGATGGAT GATGGTGAAG TTATGAGTCG CTTCAAGCCG GGTAATACTT ATCGTGATGA CGCGTTCATG AGCACATCGA CTAGAATGGA TGTTACAGAA GAATTTACTT CCGATGTCAC GTTACATCTG CAGTCCTCAT CAGCCGTCAA TATAGGTCCC TTTTCAAAAA ACCCATACGA GGACGAAGCG CTCATCCCGC CCCTGACGCC TTTCAAAGTA ACCGGTCTGC ACAAGCAGGA CGATAGGTGG CACGTCCACT TGAACGAGAT CGCAGAGAGC TCTGACGAGT GA
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Protein sequence | MGNICGTSGS NHVYSPPISP QHASGSSTPV PSASGTMLSL SHEQILSQNY ASNIKGKYRT NPRKGPSPRL SDTLMKQALS SVITQEKKRL KSQPKSIAQD IQPPNSMIKN ALDEKDSHPF GDCFSDDEFL AIHLYTSCLY RPINHHLRYA PKNDVAPVVE AMNSGLAKLA QYPDYQVSGQ LHRGIKQKMD DGEVMSRFKP GNTYRDDAFM STSTRMDVTE EFTSDVTLHL QSSSAVNIGP FSKNPYEDEA LIPPLTPFKV TGLHKQDDRW HVHLNEIAES SDE
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