Gene PSPTOA0012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTOA0012 
SymbolHopX1 
ID1187319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004633 
Strand- 
Start bp14914 
End bp16068 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content54% 
IMG OID637408347 
Producttype III effector HopX1 
Protein accessionNP_808672 
Protein GI29171488 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value0.38885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAC ATAACGCTGG CCTAACCCCA CCTTTGCCGG GCATTTCGAA TGGAAACGTT 
GGAAAGGCGG CGCAATCATC AATAACTCAA CCGCAGAGCC AGCAAGGCTC TTATGGCTTG 
CCACCAGAAA GCTCTGAGAC TCGCCCTGAT AGGGCGCGTG CGAACTATCC ATATTCATCA 
GTACAAACAC GGTTGCCGCC CGTTGCGTCT GCTGGGAAAC CGCTGCCTGA TACACCATCT 
TCTTTGCCCG GCTACTTACT GTTGCGAAGG CTGGACCATC GCCCTGTGGA TCAGGAAGGT 
ACCAAAAGTC TGATCCCGGC AGACAAGGCT GTGGCTGAAG CGCGCCGTGC ATTGCCCTTT 
GGAAGAGGCA ATATTGATGT GGATGCGCAA CTTTCCAATC TGGAAAGTGG AGCCCGCACC 
CTTGCAGCAA GGTGCTTGAG AAAAGATGCC GAGGCCGCCG GTCATGAGCC TATGCCTGCG 
AATGAGCCGA TGAACTGGCA TGTTCTTGTT GCGATGTCAG GCCAGGTGTT CGGCGCGGGC 
AACTGTGGCG AACATGCTCG TATAGCGAGC TTCGCCTATG GAGCTTTGGC CCAGGAAAAC 
GGACGATCTG AATATGAAAA CATCTACTTG GCTGCATCGA CTGAGGAAGA TCATGTGTGG 
GCTGAAACCG ACGAATCCCA GTCTGGCACC TCAACGATTG TCATGGATCC GTGGTCAAAT 
GGTTCAGCCA TATTTGCGGA GGACAGTAGG TTTGCGAAAA ATCGAAATGC TGTAGAGCGT 
ACGGATACGT TTAATCTTTC AACCGCAGCC GAAGCGGGCA AAATTACGCG TGAGACAGCC 
GAGAAGGCTT TGACGCAGGT CACAACCCGA TTGCAGAAAC GCCTGGCGGA TCAGCAGGAG 
CAAGTCTCGC CCATCAAAAG TGGTCGCTAT CGACCAGAAA AATCGGTACT TGATGATGCA 
TTTGTCCGCA GAGTGAGCGA CAAGTTGACC TCCCCTGATT TGCGGCGTGC ACTACAGGTA 
GATATTGAAG CGGTCGGAGT CGCAATGTCG CTCGGCACCA AGGGCGTCAA GGACGCTACT 
CGACAAGCCC GACCTTTGGT TGAGCTTGCA GTGAAGGTCG CCTCTCCTCA AGGCTTGGCG 
AGACGAGATG TCTGA
 
Protein sequence
MKIHNAGLTP PLPGISNGNV GKAAQSSITQ PQSQQGSYGL PPESSETRPD RARANYPYSS 
VQTRLPPVAS AGKPLPDTPS SLPGYLLLRR LDHRPVDQEG TKSLIPADKA VAEARRALPF 
GRGNIDVDAQ LSNLESGART LAARCLRKDA EAAGHEPMPA NEPMNWHVLV AMSGQVFGAG 
NCGEHARIAS FAYGALAQEN GRSEYENIYL AASTEEDHVW AETDESQSGT STIVMDPWSN 
GSAIFAEDSR FAKNRNAVER TDTFNLSTAA EAGKITRETA EKALTQVTTR LQKRLADQQE 
QVSPIKSGRY RPEKSVLDDA FVRRVSDKLT SPDLRRALQV DIEAVGVAMS LGTKGVKDAT 
RQARPLVELA VKVASPQGLA RRDV