Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4433 |
Symbol | |
ID | 1042557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5029360 |
End bp | 5030712 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637147828 |
Product | amino acid MFS transporter |
Protein accession | NP_746546 |
Protein GI | 26991121 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000773933 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTCTATTA GTACGCATCC AGCTTCAACC ATTTCTTCGA GCACAATAAA AAGCTTGAAC ATGAGCATGC CTCGCAAAGC CGTGGTCGCA GCTGCATTAG GCAACGCGAC GGAATGGTTC GATTACGGAA TCTATGCTTA CGGGCTCACC TTCATCTCAG CCGCCTTGTT TCCTGGCTCT CAATCTGAAG CCCTTTACTT CGGCCTGGCA ACATTCGCTA TCTCGTTCCT CATTCGACCA CTTGGCGGTA TGTTTTGGGG GCCGCTAGGT GACCGAATTG GCCGCAAGCG TGTGCTGGCC ATGACTGTCC TAATGATGTC TGTAGCAACA TTTATTATTG GCATCCTGCC TACTTATCAA TCGGTAGGCT GGATAGCACC TGTAGCGCTT ATCGCGCTGA GGCTCATCCA AGGTTTCTCA ACTGGCGGTG AGTACGGTGG AGCAGCTACT TTTCTAGCGG AATACGCGCC TGACAAGCGG CGAGGTTTTT ACGGTAGCTT CCTGGAGTTT GGCTCCCTCG CAGGTTTTTC ACTCGGCGCT TTGGTGACCT TGAGCGTATC GGTCGTCATT GGAGATGCCG CCATGTACGA GTGGGGGTGG CGCGTTCCAT TCCTGATCGC AGCTCCTCTG GGCGTCATCG CGGTCTATTT GCGCACCAGG ATCGAAGACA CCCCTGTGTT TCTAGAGCTC GAAAAGAAGA TGGCAAGCGA GCCTGTTCGA CCGAAGACTT CTATTGCTGA AATTTTTGGG AAATACAAAA AGGCAGCATT GTCGCTAGGG GTTTTGGTAG CAGCACTGAA CATAACTTAT TATATCCTGC TGGCATACAT GCCGACCTAC ATGCACAAGG AAGTTGGGGC GAGCGAGAAC ATGTCATTGC TTGCGCCTCT GGTTGGAATG TTGGCCATGA TGATGTTCAT ACCATTTGCG GGGCGAATCT CAGATGTGGT CGGCTTCAAA AAAATGTGGT TCTTCTCGCT TATAGGTCTT TTCATTTTAG CGATTCCAAT GTTCAAGCTC ATGTCTACAG GGCTGACGGG GTCAATGATA GGATTTGCAG TGCTAGGAGC GTTTTTTGTC CCTCAGCTTG CCACCATTTC CGCTATGTTC CCGGCAATGT TTCCAACCCA AATCCGGTAT GCGGCGCTGG CCATCGTTTA CAACATTTCG GCATCTATTT TTGGCGGAAC AACACCACTG GTATGCGATC AAATTATTAA ATTCCTCGGT TCACCTGACG CACCTGCCTA CTACATCATG GTTGCATCAG CACTTGGGAT TATTGCGTTG TTCTTTGTGA TCGAGACTAA AGGTTGCTCG ATTCGCGGGG ATGGAATACC TGGGGCAAAA TAA
|
Protein sequence | MSISTHPAST ISSSTIKSLN MSMPRKAVVA AALGNATEWF DYGIYAYGLT FISAALFPGS QSEALYFGLA TFAISFLIRP LGGMFWGPLG DRIGRKRVLA MTVLMMSVAT FIIGILPTYQ SVGWIAPVAL IALRLIQGFS TGGEYGGAAT FLAEYAPDKR RGFYGSFLEF GSLAGFSLGA LVTLSVSVVI GDAAMYEWGW RVPFLIAAPL GVIAVYLRTR IEDTPVFLEL EKKMASEPVR PKTSIAEIFG KYKKAALSLG VLVAALNITY YILLAYMPTY MHKEVGASEN MSLLAPLVGM LAMMMFIPFA GRISDVVGFK KMWFFSLIGL FILAIPMFKL MSTGLTGSMI GFAVLGAFFV PQLATISAMF PAMFPTQIRY AALAIVYNIS ASIFGGTTPL VCDQIIKFLG SPDAPAYYIM VASALGIIAL FFVIETKGCS IRGDGIPGAK
|
| |