| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4324 |
|---|
| Symbol | ccmD |
|---|
| ID | 1041809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4915146 |
|---|
| End bp | 4915322 |
|---|
| Gene Length | 177 bp |
|---|
| Protein Length | 58 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637147721 |
|---|
| Product | cytochrome c-type biogenesis protein CcmD |
|---|
| Protein accession | NP_746439 |
|---|
| Protein GI | 26991014 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3114] Heme exporter protein D |
|---|
| TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0797104 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTG CCACCTTCGG TGACTTTCTC GCCATGGGCC ACCATGGCCT GTACGTGTGG
TCGGCCTATG GCATCTGCCT GGCGGTGCTG GCGCTGAATG TCGGTGCGCC ACTGCTGGCC
CGTCGTCGCT ATTTGCAAGA AGAGGCGCGC CGTTTGCGCC GGGAGAACAA CCAGTGA
|
|---|
| Protein sequence | MSFATFGDFL AMGHHGLYVW SAYGICLAVL ALNVGAPLLA RRRYLQEEAR RLRRENNQ
|
|---|
| |