Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4216 |
Symbol | pvdE |
ID | 1042520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4763603 |
End bp | 4765261 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637147615 |
Product | cyclic peptide transporter |
Protein accession | NP_746333 |
Protein GI | 26990908 |
COG category | [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGTA AACCACGTGG CGCCGTCAGC GAACTGTTCG GCCTGCTCAA ACCCTTCTGG CCCCTGGTGA CGGTTTCGAT CATCCTGGGC ATGGTCGGTG GCCTCAGTGT CACCGCCCTG CTGGCGACCA TCAACTCGGC CCTGCACAGC GACACCGGCC TGACTCAAGG CGTGGTCCTG GGTTTTGCCG GGCTGTGCCT GCTGGCGCTG TTCAGCTCGA TCTGCTCGGA CATGGGCACC AACTGGGTCG GCCAGCACAT CATCGCGCGC CTGCGCCGTG AGCTGGGCGA GAAGGTGCTG GCAGCGCCGA TCGACCAGAT CGAACGCTAC CGCAGCCATC GCCTCATCCC CGTGCTGACC CATGACGTCG ACACCATCAG CGACTTCGCC TTCGTCTTCG CGCCCCTGGC CGTTTCGCTC ACCGTCACCG TGGGCTGCCT GGGCTATCTG GCGCACCTGT CGATACCGAT GTTCCTGGTG ATCCTGGTGG CCATCGGCAT CGGCTCGGTC ATGCAGTTCG TTGCCCGCTC GTGGGGTGTG CGCGGCTTCG AAAGCGCCCG AGAAGCCGAG GATGAACTGC AAAAGCATTA CAGCGCGATC GCCGAAGGTG CCAAGGAACT GCGCATTCAC CGCCCACGCC GCAAACGCAT GTTCCAGCAC GGCATCCAGG ACACCGCCAA CCGTATTTGC GCCACCCAGG TACGCTCGAT CAACACCTTC GTAATCGCCA AGACCCTGGG CTCGATGCTG TTCTTCGTGG TCATCGCCGT GGCCCTGGCC ATGCAGTCGC TGTGGCCCAC AGGCGACAAG AGCGTCACCA GCGGTTTCGT GCTGGTGCTG CTGTACATGA AAGGCCCGCT GGAACACCTG ATCAGCACCC TGCCGATCAT CAGCAAGGCC CAGATCGCCT TCCGCCGCAT CGCCGAACTG TCACGCCAGT TCTCATCGCC CGAGCCGCAC TTGCTGCTGG ATGACACCCG CGCCGCCGAC AAGGCCCTGC ACACCCTGCA GCTGCAGGAC GTCAGCTACA CCTTCCCCCG CGTGGAAGGC AGTGAGCCGT TTCATCTGGG TCCGGTGAAC CTGAGCATCA AGCAAGGCGA CATCGTGTTC ATCGTCGGCG AAAACGGTTG CGGCAAGACC ACCCTTATCA AGCTGCTGCT CGGCCTATAC GCACCTCAGC AAGGCACGAT CAGCCTCGAC GGCAAGCCGG TGACGGCCGA AAACCGTGAC GACTACCGGC AGCTGTTCAC CACCATCTTC GCCGACTACT ACCTGTTCGA CGATGTCATC CAGGGTGACC GGCCAGTACC TGCCGACGCC AGTCGCTACC TGGAGCGCCT GGAGATCGCT CACAAGGTCA GCATCCGTGA CGGCGTGTTC AGCACCACCG ACCTGTCCAC TGGCCAACGC AAGCGCCTGG CGCTAGTGAG CGCCTGGCTG GAGGAGCGCC CGGTGCTGGT GTTCGACGAA TGGGCCGCCG ACCAGGATCC GACGTTCCGG CGAATTTTCT ACACAGAGCT GCTGCCGGAC CTCAAGCGCC TGGGCAAGAC CATCATCGTG ATAAGCCACG ACGACCGCTA CTTCGACGTC GCCGACCAGC TCATCCACAT GGCGGCAGGC AAGGTCCAAC AGGAGAACCG CGTCGCAGAT TGCATTTAA
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Protein sequence | MTSKPRGAVS ELFGLLKPFW PLVTVSIILG MVGGLSVTAL LATINSALHS DTGLTQGVVL GFAGLCLLAL FSSICSDMGT NWVGQHIIAR LRRELGEKVL AAPIDQIERY RSHRLIPVLT HDVDTISDFA FVFAPLAVSL TVTVGCLGYL AHLSIPMFLV ILVAIGIGSV MQFVARSWGV RGFESAREAE DELQKHYSAI AEGAKELRIH RPRRKRMFQH GIQDTANRIC ATQVRSINTF VIAKTLGSML FFVVIAVALA MQSLWPTGDK SVTSGFVLVL LYMKGPLEHL ISTLPIISKA QIAFRRIAEL SRQFSSPEPH LLLDDTRAAD KALHTLQLQD VSYTFPRVEG SEPFHLGPVN LSIKQGDIVF IVGENGCGKT TLIKLLLGLY APQQGTISLD GKPVTAENRD DYRQLFTTIF ADYYLFDDVI QGDRPVPADA SRYLERLEIA HKVSIRDGVF STTDLSTGQR KRLALVSAWL EERPVLVFDE WAADQDPTFR RIFYTELLPD LKRLGKTIIV ISHDDRYFDV ADQLIHMAAG KVQQENRVAD CI
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