| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4085 |
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| Symbol | |
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| ID | 1042182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4613627 |
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| End bp | 4618219 |
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| Gene Length | 4593 bp |
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| Protein Length | 1530 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637147490 |
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| Product | RHS family protein, putative |
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| Protein accession | NP_746209 |
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| Protein GI | 26990784 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.572678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0133781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGA CCGTTCACGC CGCCCGAATG GGCGACGCAA TTCTTCATCC ATCGCTTGCC
GCTGAAATGA TCAGCGCAGT TGCCGAGGCC GTTATCTATG CAGCGGCCAC CGCGGCCGTC
GCCGCAGCCA TCAGCTTGGC CGTGGTTGGC ACCGTAGCCA CTGGCGGTGC GGCTGGCGTC
GCCATCGCCG CAGTCGCGGG TGTGGCAGTC GGAGCAGTGA GCACCCTTTC CGTCGGCGAA
GACCAGACTG TCGGCGACGC CATCTCCAGC TTTTGCGACA GCCTTGGCAA CAGCGTGGAC
TCGCCCGATC CCTACGGAAA AATCGAGAGC GGGTCAACCA ATGTGCTCAT TAACAGTGAG
CCCGCTGCGC GCGCGGCCGG CATCACTGGC CCACCTGGAG GCGGCGCAGC CGATACTGAA
CAAGAGGAAC CGTCCATCCT GGAGAACGTC GGTTCCATGG CCATGGCTGC GGTGCCTTAT
CTCGTCCCGT TCGTGGGGCT GGGGATGGCC ATACGTGACA TCTTCAACCC GCCCGTGACC
ACACCGGCCA ACCCAGGCTC GGAGCCCGCT GAAGGAGACA AGATCAGCTG TTCGCGCCAC
CCGCCCCTGC CCGACACCTT CATTGCGCAA GGCTCGGACA AGGTATTCAT CAATGGCCAA
CCCGCAGCGC GTTCAGGTGA CAAGACCACC TGCGATGCCA CGATTGATGT GAATGAAAAC
GTATCGCCCA ATGTGCGCAT TGGTGGCGGT ACGGCGACGG TCCGGGACAT TCGCAACGGC
AAGAGCAAGA TTGCGATGTT TACCGGGATT ATTGCGGGGA TGCTTATCTC CCGAAGGTTT
GGCCGCATCA AAGGGTGCAC ATTAGGCAAC CCGGTTGCTG TTGCCACCGG GAGCAAGCTG
CAGGAGGGTC CGGAGGACAT CGACTTCAAT CTCCCAGGCT TGCTGGCCAT CCAATGGGCA
CGGCGCTACG ACAGCAGGGA CATGCGCAGC GACGGTCTAC TGGGGATGGG TTGGAGTGTC
CCCTATGAAG TGGAGCTGGC CCGCGTCCCA CATCCTCAAG GCGGTACGCT GTGGATCTAC
ATCGACAACG ACGGTAACCG ACTGGAACTG GGCCGCCTCA GTGCCGGTGA TGCCTTCATC
AGTGCCGTGG ACGGCTTGGC CTTCTTCCAG CTGGAGGACG GCCAGACCGT TGTCGAAGAT
ATCAATGAAG GGCTTTATCG GGTCTTCGAT ACCGACCCGC TGAATCCGAA ACGCTCACGG
CTGATCAGGC TCGGCGACCG CAATCTCAAT TGCCTCGACC TGCTGTACGA CGAACAAGGG
CGCCTGAAAG CCCTCTATGA CAAGTACGGC CAAACGGTCG TGCAGCTTCA CTATGCCGCC
AGGCATCCCC AGCGTGTCAG TGAGGTATCA CGGGTGTTCC TGAAAAACGG TGGAACACCT
ACGGTAGAAC GCAGCGAACT GCTGGTCAGC TATCGCTACA CCGACAACGG GCAACTGCAT
GAGGTATTGG ATGCGACGGA TCAACGAGTC CGCCGCTTCA CTTACACCCC CGAGGGCTAT
CTCAATAGCC ATCAACTGGC TAGCGGTGCT GTCCGCGAAT ACGAATGGGC GCGCTTCGCC
ATTCCTGAAA CGCGCCCTAC TCCCAAGCGC CTGGACGGCA CGCCCTACCG CTTGCCTCCA
CTGCTGGAGC CCCAACCCGA TCACGAATGG CGAGTGATTC GCCACTGGGG CAGCGATGGT
GAAGAGTACC GGTTCGAGTA CAACCTGGAA GCCGGTGAAA CCCTCGTCAC GGACAACCTC
GGCCGCCGTG ATCACTACTA CTGGGGGCCA CTGTACGAGG TCTATAAGCA CATCGACCCT
CAGGGCAACT GCTGGCTGGC GGAAGTGATC GCCGGACAGT TGATCAAGCG CATCGACCCG
CAAGGAGGCG AATGGCGCTA CAGCTACGAC GATATCGGCC GCCTGATCGA AACCCGCGAT
CCCCTCGGCC GCAGCGAACA CATCAAATAC CTACGACATT GGGCGCTACC CATCCAGGTC
ACCGATACAG CCGGACGGAC TCGGCAATAC GGCTACGACA GCCACGGCAA TCTGCTCTGG
CAGCAGGACC CGCTGGGGCG CGAGACACAG TACCAATACG ACCCGGAAGG CCGTGTTACC
CAGGTCACCG ATGCCCTCGA AAAGAGCAAG TACCTGAGCT GGAACACGTG CGGTCAGTTG
CTCAGCTACC GCGACTGCAG CAATGCCCAG ACGCTGTATC ACTACGACGC CCATGGCCGC
TTGCGCGAAA GCATCAATGC CCGGGGTGAA CACACCCACT TCCGCTACGA CGCACGTGGT
TATCTGGTCG AAAGCGAACG CCCGGACGGT CGCATTGATC GTTATGAAAT TGATGTCGCT
GGTCAACTGA CGCGCTATAT CGACCCTGCC CAGAAAACCC TGCAATTTCG CTACGACCCC
AGCGGCCGGC TGGTCGAACG CACGGACGCC ATGGGCTACA GCGTGAAATT CCGCTACGAC
GCCTATGGTC GGCTACTGCA ACTTACCAAC GAGAATGACG AGTCATACCG CTTCGGCTGG
GACGAACTGG ACCGGCTGGT GGCACAAAAA GACCTGGATG GCAGTGGCCG CCTCTATGCC
TACAACGTGC TGGATGAGGT CATTCGTCTT ACCCATGTGC CCTCGCCTGA CGAGCAGCCG
CCCCTGTCCG ACAACGCCCC GCCGACACGG ACGACTGCCA TCCGCCATGA CTTCGAGCGG
GACGCCATCG GCCGGCTTGT CAGCAAGCGC ACCGAAGATG GCACCACCGA CTACCGCTAC
GACGCGGCCG ACAATCTGCT GTCCATCACC TTCACAGACA ATAAAGGAGA AAAACAGCAA
CTCGACTACA CCTACGACGC CAACGGGCAA CTGCTCAGCG AAACCAACAG CGCTGGCTTG
CTGCAGTACC GCTACGACGA ACTGGGTAAC CTGCAGACGC TAGTCCTGCC CGACCAACGC
GAACTCAACC ACCTGTACTA CGGCAGCGGG CACCTGCACC AGATCAACCT GAACGGCCGG
GTGATCAGCG ATTTCGAGCG TGATGCGGTG CACGACGAGG TCCTGCGGAC CCAAGGCAAA
CTGGTCACCC GCACGCGCTA CGACACCAGC GGTCGCTTGG CCGGCAAGGC TATTCACTAC
CGCGATGCCC CTGCTGAAGT GCTGCCGCTG CTGGACAAGG CCTATCGCTA CGATGCCAGC
GACAACCTGA TTGCCGAGGT ACTGACCCAG ACACAGCGCC GAGGGATGTC CAACGCTGCC
AATGACGAAA ACGCTAACCT CGAACAGATC ATCGGTCGCT TCCTTGACCT ACCCCACACG
GGCAAGACCT ATTCGGGACA CAACCGCTAC GGCTACGACC TCAACGAGCA ACTGCAGACC
GTTCACCAGT CACGCCCCAA CTGGCAGGCC ACGCAGGTCG AGGATTTCAA GTACGACAAG
GCCGGCAACC TGTTCGACGG CCCCAAACTC AATGGCCTGA TCAAGCACAA CCGGGTGTTG
GTGTATCAGG ACAAGCGCTA TCGCTATGAC CGCTTTGGGC GGCTGTGCGA GAAGCGGATC
GGCAGCAATT GGGTGCAGTA TTTCGAGTAT GACGCCGAGC AGCGGCTGGT TTGCGTGGAG
CAGTACCGCA GTGGCGAGCG TGAGCGGGTG GTGTTTGCCT ATGACCCGTT GGGGAGGCGG
ATCAGCAAGG AGGTTTATCA GAGGGACTAT CCAGAGCCGC GTCGGCGGGT GCTGTTTCAC
TGGCAAGGGT TTCGCTTGCT TCAAGAAGTG CAGAGTGGTT TGGCTAGCTT GTATGTGTAT
GCCACTGTGG AGAGCTATGA CCCGTTGGCG CGGGTTGACG GTAAACCTGG CAGCGAAGCA
ATTCACTATT TTCATACCAC CTTGGTTGGG CAACCGGAGC AGCTGACTGA TTCTGATGGC
AACACGATCT GGCGTAGTGA CCATCACGGT TGGGGAAAGA TAATTAATGA GTGGCACAGC
CAACAAAATG GACGTGAACA AAACCTGCGA AATCAAGGCC AATACATTGA TCGCGAGACT
GGGCTACACT TCAATATATT CAGATTTTAC GACCCCGATA TAGGCCGCTT CACAACAACA
GACCCTCTCG GGATCGAAGG AGGAGTCAAT CTCTACAGCT ACGCCCCAAA TATAGTAAAC
TACTCAGATC CGCTTGGGCT CTGCCCCGAA AATGTCAAAG AATATGATAT CACCCCATAC
AGGCCTAGCA ATAGCCCCCT CGAAAACCAT CATGGCATCC TAGATATCTG GGCGGCACAA
AACGTGCCCT CATATGGAGG AAAATATCCC AAAGGGTCTC CTACGATCGT ATTGTCTAGT
AAAAATCATG CAGCCACCAA GGCGGTGTAT CGTGAGTGGC TAAGAGAAAA AACTGGAAAA
CCTGTGGGAG GCAAAGTAGA TTGGTCGCAA ATCAGCAATC GAGAGGTCAT GCAACTTTCG
GAGCGAATGT TTGACGTCGC AGGAGTTCCA GCCACCAGCC GAACCTCCTA CTACAGGGCA
TTGAATAGAT ATTTACACAC AGGCACTTTC TGA
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| Protein sequence | MAQTVHAARM GDAILHPSLA AEMISAVAEA VIYAAATAAV AAAISLAVVG TVATGGAAGV
AIAAVAGVAV GAVSTLSVGE DQTVGDAISS FCDSLGNSVD SPDPYGKIES GSTNVLINSE
PAARAAGITG PPGGGAADTE QEEPSILENV GSMAMAAVPY LVPFVGLGMA IRDIFNPPVT
TPANPGSEPA EGDKISCSRH PPLPDTFIAQ GSDKVFINGQ PAARSGDKTT CDATIDVNEN
VSPNVRIGGG TATVRDIRNG KSKIAMFTGI IAGMLISRRF GRIKGCTLGN PVAVATGSKL
QEGPEDIDFN LPGLLAIQWA RRYDSRDMRS DGLLGMGWSV PYEVELARVP HPQGGTLWIY
IDNDGNRLEL GRLSAGDAFI SAVDGLAFFQ LEDGQTVVED INEGLYRVFD TDPLNPKRSR
LIRLGDRNLN CLDLLYDEQG RLKALYDKYG QTVVQLHYAA RHPQRVSEVS RVFLKNGGTP
TVERSELLVS YRYTDNGQLH EVLDATDQRV RRFTYTPEGY LNSHQLASGA VREYEWARFA
IPETRPTPKR LDGTPYRLPP LLEPQPDHEW RVIRHWGSDG EEYRFEYNLE AGETLVTDNL
GRRDHYYWGP LYEVYKHIDP QGNCWLAEVI AGQLIKRIDP QGGEWRYSYD DIGRLIETRD
PLGRSEHIKY LRHWALPIQV TDTAGRTRQY GYDSHGNLLW QQDPLGRETQ YQYDPEGRVT
QVTDALEKSK YLSWNTCGQL LSYRDCSNAQ TLYHYDAHGR LRESINARGE HTHFRYDARG
YLVESERPDG RIDRYEIDVA GQLTRYIDPA QKTLQFRYDP SGRLVERTDA MGYSVKFRYD
AYGRLLQLTN ENDESYRFGW DELDRLVAQK DLDGSGRLYA YNVLDEVIRL THVPSPDEQP
PLSDNAPPTR TTAIRHDFER DAIGRLVSKR TEDGTTDYRY DAADNLLSIT FTDNKGEKQQ
LDYTYDANGQ LLSETNSAGL LQYRYDELGN LQTLVLPDQR ELNHLYYGSG HLHQINLNGR
VISDFERDAV HDEVLRTQGK LVTRTRYDTS GRLAGKAIHY RDAPAEVLPL LDKAYRYDAS
DNLIAEVLTQ TQRRGMSNAA NDENANLEQI IGRFLDLPHT GKTYSGHNRY GYDLNEQLQT
VHQSRPNWQA TQVEDFKYDK AGNLFDGPKL NGLIKHNRVL VYQDKRYRYD RFGRLCEKRI
GSNWVQYFEY DAEQRLVCVE QYRSGERERV VFAYDPLGRR ISKEVYQRDY PEPRRRVLFH
WQGFRLLQEV QSGLASLYVY ATVESYDPLA RVDGKPGSEA IHYFHTTLVG QPEQLTDSDG
NTIWRSDHHG WGKIINEWHS QQNGREQNLR NQGQYIDRET GLHFNIFRFY DPDIGRFTTT
DPLGIEGGVN LYSYAPNIVN YSDPLGLCPE NVKEYDITPY RPSNSPLENH HGILDIWAAQ
NVPSYGGKYP KGSPTIVLSS KNHAATKAVY REWLREKTGK PVGGKVDWSQ ISNREVMQLS
ERMFDVAGVP ATSRTSYYRA LNRYLHTGTF
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