| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3957 |
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| Symbol | |
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| ID | 1046606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4463980 |
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| End bp | 4465953 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637147367 |
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| Product | choline/carnitine/betaine transporter family protein |
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| Protein accession | NP_746087 |
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| Protein GI | 26990662 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0148602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.612846 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAG CCCCCAAACC CAGGAGCACC CTCAATCCAC CTGTCTTCTA CACCAGTGCG
ATACTTGTTT TTCTGCTGGT CTTGTACGCC ACGGCATTTC AGGAGCACGC CCAAACGCTG
TTCGAGCAAG TCCAGCGATG GATCATCACC AATGCCAGCT GGTTCTATAT TCTTGTTGTA
GCGTTGGTGT TGATCAGCGT GGTGTTTCTG GCCGTCAGCC GCTATGGCGA CATCAAGCTA
GGCCCTGACC ACAGTGAGCC GGATTACCGA AAGAGCAGTT GGTTCGCCAT GCTGTTCTCG
GCAGGAATGG GGATTGGCCT CATGTTCTTC GGCGTGGCCG AACCGGTCAT GCATTTCTCC
ACGCCGCCCG TGGGCGATCC CGGCACCGTT GCCGCGGCGC GCGAAGCCAT GAAAATCACC
TTTTTCCACT GGGGCCTGCA TGCCTGGGCG ATCTATGCCA TCGTCGCGCT GATCCTGGCC
TACTTCAGCT TCCGCAATGG CCTTCCGTTA ACCTTGCGTT CGGCACTCTA TCCGCTGATC
GGTGAGCGAA TCTATGGCCC TATAGGGCAT GCCGTGGATG TCTTCGCCAT CCTCGGCACG
GTGTTTGGTG TGGCCACCTC GCTGGGTTAT GGGGTATTGC AGATCAACAG CGGATTTCAT
CATGTGTTCG GTTTGCCGGT AAACACCACC GTGCAAGTCA TCCTCATCAC CGCCACCTGC
GCATTGGCGA CGCTTTCGGT GGCTAGCGGC CTGGATAAAG GTATTCGCAT CCTGTCCGAA
CTCAACCTGA GCCTGGCGGT GATCCTGATG CTGTTCGTGC TGCTGCTTGG GCCTACGGTG
TTCCTGCTGC AGACCTATGT ACAGAATACC GGCGCCTACC TTTCGGACAT CGTCAATAAA
ACCTTCAATC TCTACGCTTA CGAGCCCACC GACTGGATCG GCGGCTGGAC CTTGCTGTAC
TGGGGCTGGT GGTTGTCCTG GTCGCCCTTC GTGGGTTTGT TCATCGCACG TATTTCGCGA
GGGCGGACCA TCCGCGAATT CGTCTGCGGC GTACTGTTCG TGCCTGCGGG TTTCACCTTG
CTGTGGATGA CGGTGTTCGG CGACTCGGCA ATCCATATGA TCCTCAACGA TGGCGTGAAG
GATCTGGCTG CTGTGGTCAG TGAAGACAGT TCCCTCGCGT TGTTTGCTTT CCTGGAGCAT
TTTCCGTTCT CCAGCATCAT TTCGCTGGTC GCGGTGCTGA TGGTGGTCGT GTTCTTTGTG
ACCTCGGCGG ACTCTGGTGC GCTGGTCGTG GATATGCTCG CCTCCTCCGG ACAAGGTCAC
TCACCCCTGT GGCAACGGAT CTTCTGGTCA GTCTGCATAG GCGCAGTCGC GATCGCGTTG
CTGCTGGCGA ACGGCCTCAA GGCGCTGCAG ACCGCGACCA TTGCGAGCGC TTTGCCGTTC
GCGGTCATCC TGCTGGTTGC GATTTGGGGC TTGTTCAAGG CGCTGAGTCT TGATGCGACT
CGCCGCGGGT TGCGCAATCA AGCCTTGCCG GGCCCACGCC ATACCCGCCA CCCACACGGC
GGCTGGCAGC GGAGGCTGCG CAATATTGCA TTGATGCCTC GCCGGGTTCA TGTCACGCGC
TTTATCGCCG AGGTGGTGAG GCCGGCCTGT GAAGAGGTCG CCCAGGAACT GCGCAAGCAA
GGCTACGAGG TGAGCGTGAA TGAGCGTGAT GATGGGCGGG TATCTCTGGA GCTCTCCCAT
GCCGGTGAAG GACGTTTCCT CTACGAGGTG CGGCCACGGG CCTTCAATAC GCCAAGCTTC
GTCATGCGGG ACACCGAAGA CGGTGCCGAT TCCCGCAAGT ATTTCCGCGC GGAAGTGCAT
CTGCGAGAAG GGGGCCAGGA CTACGACATC ATGGGGTGGA GCCGTGACGA TGTGATTGGC
GACATCCTGG ATCAGTACGA ACGCCACCTG CATTACTTGC ACGTGGTGGG CTGA
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| Protein sequence | MTAAPKPRST LNPPVFYTSA ILVFLLVLYA TAFQEHAQTL FEQVQRWIIT NASWFYILVV
ALVLISVVFL AVSRYGDIKL GPDHSEPDYR KSSWFAMLFS AGMGIGLMFF GVAEPVMHFS
TPPVGDPGTV AAAREAMKIT FFHWGLHAWA IYAIVALILA YFSFRNGLPL TLRSALYPLI
GERIYGPIGH AVDVFAILGT VFGVATSLGY GVLQINSGFH HVFGLPVNTT VQVILITATC
ALATLSVASG LDKGIRILSE LNLSLAVILM LFVLLLGPTV FLLQTYVQNT GAYLSDIVNK
TFNLYAYEPT DWIGGWTLLY WGWWLSWSPF VGLFIARISR GRTIREFVCG VLFVPAGFTL
LWMTVFGDSA IHMILNDGVK DLAAVVSEDS SLALFAFLEH FPFSSIISLV AVLMVVVFFV
TSADSGALVV DMLASSGQGH SPLWQRIFWS VCIGAVAIAL LLANGLKALQ TATIASALPF
AVILLVAIWG LFKALSLDAT RRGLRNQALP GPRHTRHPHG GWQRRLRNIA LMPRRVHVTR
FIAEVVRPAC EEVAQELRKQ GYEVSVNERD DGRVSLELSH AGEGRFLYEV RPRAFNTPSF
VMRDTEDGAD SRKYFRAEVH LREGGQDYDI MGWSRDDVIG DILDQYERHL HYLHVVG
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