Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3768 |
Symbol | aroE |
ID | 1046382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4297230 |
End bp | 4298051 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637147176 |
Product | shikimate 5-dehydrogenase |
Protein accession | NP_745898 |
Protein GI | 161378126 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.101055 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00148895 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGACAA CTCCCAGCCG GGACACCGTG CTTTGCATCT CTCTGGCCGG TCGCCCCGGC ACCTTCGGCG TGCGCTTTCA CAACCACCTG TACCAGCAGT TGGGCCTGGA CTTCTACTAC AAGGCCATGC GCACCGATGA CCTGCCGGCG GCGGTGGCAG GGATCCGCGC CCTGGGTATT CGCGGCTGCG GGGTGTCGAT GCCGTACAAG GAAGCCTGCA TGGCCTTGGT CGACGAAATC GATCCCTCGG CGGCGGCCAT CGAGTCGGTC AATACCCTTG TCAATTGCAA TGGCCACCTC AAGGCGTACA ACACCGATTA CCTGGCCGTG CGCCAATTGC TGGCTCAGCA TCAGGTCGAT CCGGGCACGG CCTTTGCCCT GCGAGGCAGC GGTGGCATGG CCAAGGCCGT GGCCAGCGCC TTGCGCGATG CCGGGTTTGC CGAAGGCATC ATCGTTGCAC GCAACGAGCA GGCCGGGCGT CAGTTGGCGG ATGTCTGTGG TTATCGCTGG GTGCCTGAGC CAGGCGACAT TTGCCCGCCC ATGCTGGTGA ACGTGACGCC GATCGGTATG GCAGGCGGGC TGGAGGCAGA AGAGCTGGCG TTTCCCGAGC ACGCCATCGC GGCGGCGGAA CGGGTGTTCG ATGTGGTGGC GATGCCGGCG CAGACGCCGT TGATTCGCCG GGCTCAGGCG TTGGGCAAGC CGGTGATCAC TGGGCTGGAG GTCATTGCGC TGCAGGCGCT GGAACAGTTC GTGTTGTACA CCGGGGTAAG GCCGACGCGG GAGCAGGTGG ATGCGGCGGT GGCATACGCG CGGGCTACCT AG
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Protein sequence | MPTTPSRDTV LCISLAGRPG TFGVRFHNHL YQQLGLDFYY KAMRTDDLPA AVAGIRALGI RGCGVSMPYK EACMALVDEI DPSAAAIESV NTLVNCNGHL KAYNTDYLAV RQLLAQHQVD PGTAFALRGS GGMAKAVASA LRDAGFAEGI IVARNEQAGR QLADVCGYRW VPEPGDICPP MLVNVTPIGM AGGLEAEELA FPEHAIAAAE RVFDVVAMPA QTPLIRRAQA LGKPVITGLE VIALQALEQF VLYTGVRPTR EQVDAAVAYA RAT
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