| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3483 |
|---|
| Symbol | |
|---|
| ID | 1046425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3946249 |
|---|
| End bp | 3948045 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146898 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | NP_745620 |
|---|
| Protein GI | 26990195 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.136684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.490058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAG CATTCGATGC AACCCCGGAA TCTGCAAAGC CTGCACCGAC GTCTTCGCGG
GCATGCCCGC TCCCACAGGA TGTATGCAGC CCACAGACCT GTGATGTACC TGTGGGAGCG
GGCATGCCCG CGAAGAACCC AGCAAAAATT TCCGCCTACC CCCGCGACCT CCTGGCCCAG
GCCCGTCTGC AAGCCACTGA CGAGCGCCTG CTCGACTGCC TGGAACGCCT GGCCTGCGAC
ACCCCCGACA CCTTCACCCG GCGCCTGGGC CTGACCCTGC ATTACCCCGT ACTCGACAGC
CACAGCCTGC TGGCCAGCAC CCCACGCTTC GACAAGCTGG CCTTGGCCCA GTGCCTCAAG
CGCGAATGTG TGCTGATCGA GCAAGGCGGC CAGTTGCTGG GCGTGTTCGC CGACCCCTTC
GACCCCGCTC GCCTGGCCTG GATCGACGAC GTACTGCAAG GCGCGCCGCT TTACCTGGCC
CACGCCGCCG ACCTGGCCAC CTTCCTGGCC CGTCATGAAG AAAGCTTCCA CGCAGTCGAT
GCCCTTGACC ACGACGCCGA AGCCAGCAGC GAGGGCGACC CGCTGCAACG CCTGTCGCTG
GCCAGTATCA GCGAAGACCA GAGCCGCGTG GTCAAACTGG TCAACTCCAC CCTGTACGAC
GCCCTCAAGC TGCACGCCAG CGACATCCAC CTGGGCATGA CTGGCCAGGG CCTGACCATC
AAGTACCGCA TCGACGGCGT GCTCAACGGT GCCGGCAAGG CCAGTGGCAG CGCCTTCGCC
GACCAGGTGA TCTCGCGCAT CAAGGTCATG GCCGAGCTGG ACATCGGCGA AAAACGCGTG
CCCCAGGACG GCCGCTTCAA GGTGGCCGTG GGCGACCGGC AAATCGACTT TCGGGTGTCG
ATCATGCCTA GCATCTTCGG TGAAGATGCC GTGCTGCGGG TGCTCGACAA GCAGGACTTG
TCCGACCGGG TCAGCGGCGT GCAGCTGCAA GCCTTGGGCT TTGCCGACGA AACCTTGCGC
GCCCTGCGCC GGTTGGCGGC AGAACCCTAC GGCATGATCC TGGTCACCGG CCCTACAGGC
AGCGGCAAGA CCACCACCCT GTACGCCATG ATCAGCGAGA TCAACCATGG TGTGGACAAG
ATCATCACCA TCGAGGACCC GGTCGAGTAT CAATTGCCCG GCGTGTTGCA GATCCCGGTC
AACGAGAAGA AGGGCCTGAC CTTCGCCCGC GGCCTGCGCT CGATTCTGCG TCACGACCCG
GACAAGATCC TGGTCGGCGA AATCCGTGAC CCCGACACGG CCCAGATTGC CGTGCAATCG
GCGCTCACCG GCCACCTGGT GTTCACCACC ATCCACGCCA ACAACGTGTT CGACGTGATT
GGCCGCTTCA GCCAGATGCA GGTCGACCCC TACAGCTTCG TTTCCGCGCT CAATGCGGTA
CTGGCCCAGC GCCTGATTCG CCTGGCCTGC CCGCACTGCG CCACGCCCTG CGAACACGAT
GACGACACCC TGTATGGCTC AGGCCTAACC CGCGAGGGGG TGGCCGGCTG GACGTTCGTC
CGCGTCAAGG GCTGCGGCCA CTGCCGTGGC AGTGGTTACC GAGGCCGCAG TGCCATTGCC
GAACTGCTGC ACCTGGACGA TGACCTGCGG CAAATGATCG TGGAGCGCCG CCCGCTGGCG
CAGATCAAGA CGCTTGCCTG CCAGCGCGGC CTGCGCCTGC TGCGAGCCTC GGCCCTGGAC
CTGGTCCGCG ATGGCCGTAC CACCCTTGAG GAGATCAACC GTGTCACATT CATCTGA
|
|---|
| Protein sequence | MPEAFDATPE SAKPAPTSSR ACPLPQDVCS PQTCDVPVGA GMPAKNPAKI SAYPRDLLAQ
ARLQATDERL LDCLERLACD TPDTFTRRLG LTLHYPVLDS HSLLASTPRF DKLALAQCLK
RECVLIEQGG QLLGVFADPF DPARLAWIDD VLQGAPLYLA HAADLATFLA RHEESFHAVD
ALDHDAEASS EGDPLQRLSL ASISEDQSRV VKLVNSTLYD ALKLHASDIH LGMTGQGLTI
KYRIDGVLNG AGKASGSAFA DQVISRIKVM AELDIGEKRV PQDGRFKVAV GDRQIDFRVS
IMPSIFGEDA VLRVLDKQDL SDRVSGVQLQ ALGFADETLR ALRRLAAEPY GMILVTGPTG
SGKTTTLYAM ISEINHGVDK IITIEDPVEY QLPGVLQIPV NEKKGLTFAR GLRSILRHDP
DKILVGEIRD PDTAQIAVQS ALTGHLVFTT IHANNVFDVI GRFSQMQVDP YSFVSALNAV
LAQRLIRLAC PHCATPCEHD DDTLYGSGLT REGVAGWTFV RVKGCGHCRG SGYRGRSAIA
ELLHLDDDLR QMIVERRPLA QIKTLACQRG LRLLRASALD LVRDGRTTLE EINRVTFI
|
|---|
| |