Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3344 |
Symbol | nikC |
ID | 1046990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3782061 |
End bp | 3782906 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637146762 |
Product | nickel transporter permease NikC |
Protein accession | NP_745484 |
Protein GI | 26990059 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTGTGC ACGCTGCCCT GCGTCAGCCA TTGCTGCTGC GCCGCCCCAG CCTGATGATC GGCCTGGCCC TGGTCGGCCT GCTGGCGGTG CTGGCGCTGT TCGGCCACTG GATCGCCCCG CATGACCCCG ACCTGGTCGA CCTCGGCCAG CGCCTGCAGG CGCCAGACGC CCGTCACTGG CTGGGCACAG ACCACCTCGG GCGCGACCTG CTTTCGCGGT TGATCGTCGG CACGCGCCTG TCCTTGGGCA GCGTGATGCT GACCCTGGCG CTGGTACTGG CCCTGGGGCT CGCGGTCGGC GGTGTGGCCG GGTTCGTAGG CGGGCGCACC GACCTGCTGC TGATGCGCCT GTGCGACATG TTCATGACCT TCCCCACGCT GGTACTGGCA TTTTTCTTCG TCACCTTGCT GGGCACTGGC CTGAGCAACG TGATCATCGC CATCGCCCTG TCCCACTGGG CCTGGTATGC GCGCATGGTG CGCGGCCTGG TGATTGCCCA GCGCGGCCGC GAATACGTAT TGGCTTCACG CCTGGCCGGC GCTTCACGCT GGGCGCGGCT GCGCCAGCAT GTGCTGCCCA ATATCGCCGG CCCGTTGCTG GTGCTGGCAA CCATGGACAT CGGCCACATG ATGCTGCACG TCTCCGGCCT GTCGTTCCTT GGCCTCGGGG TGGCGCCCCC CACCGCCGAA TGGGGCGTGA TGATCAACGA CGCCAAGGAA TTCATCTGGA CGCAGCCACA ACTGCTGCTG TTGCCAGGGC TGATGATCTT CTTCTCGGTG ATGGCCTTCA ACCTGCTGGG CGATGCGCTG CGCGACCGCC TGGACCCTGC ACAGGAGCGC CATTGA
|
Protein sequence | MSVHAALRQP LLLRRPSLMI GLALVGLLAV LALFGHWIAP HDPDLVDLGQ RLQAPDARHW LGTDHLGRDL LSRLIVGTRL SLGSVMLTLA LVLALGLAVG GVAGFVGGRT DLLLMRLCDM FMTFPTLVLA FFFVTLLGTG LSNVIIAIAL SHWAWYARMV RGLVIAQRGR EYVLASRLAG ASRWARLRQH VLPNIAGPLL VLATMDIGHM MLHVSGLSFL GLGVAPPTAE WGVMINDAKE FIWTQPQLLL LPGLMIFFSV MAFNLLGDAL RDRLDPAQER H
|
| |