| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3242 |
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| Symbol | |
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| ID | 1046889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3676995 |
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| End bp | 3678563 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637146663 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_745385 |
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| Protein GI | 26989960 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.564089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGCAG CCAGGAAACA GGACGACGAT GGGCTTTTCG CCATCAGTGG CGAGGGCCGC
GCCGTGGCGC TGTTCCGCCT GGTACTGGCA TTCATGCTGG TGGTGATGCT GGCATTTGTA
CTGGTGGAAG GTTGGCGCAT CTGGCGCGAC TACCGCTTTG CCTATAACAA TGCCGAGAAC
ATGGTCAGCA ACCTGGCCCG GGCCACGGCG CAGCACGCCG AGGACGCTAT CCGCCAGGTC
GACGCCATTA CCGGTGCCTT GGCCGAGCGC CTGGAAGGCG ATGGTTTCGA TCACATCGAC
CGGCCCCGCC TGCATGCCTT GCTGGCCCAG CAAAAACGCA TCATGCCGCA GTTGCACGGG
CTTTTCGTTT ACGGCCCGGA CGGCAGCTGG ATCGTCACTG ATCAGGCGGC CATCCCGCCC
AAGGCCAATA ACGCCGACCG GGACTACTTC GCCTATCACC GCAGCCATAA CGACCCTGGT
GTACATATCG GTTCGGTGGT TCGCAGCCGT TCCACCGGCG ACCTGATCAT TCCTATTTCC
AGGCGCCTGG AGCATGCCGA CGGCAGCTTC GCCGGCGTAT TGCTTGGCAC GATCAAAGTG
GCGTGGTTCG TGCGTTACTA CGGCGACTTC AAGATCGACG AGCGCGGCGC GCTGGTGCTC
GCCAAGCGCG ACGGCACCCT CCTGGTACGG CGCCCGTTCG TGGAACAGGT GATAGGCCGA
AGTCTTGCCA ACAGTGAGAT CTTCCGCAAC CACTTGCCGT ATGCCACAGA AGGGGTAGCC
GAGGCGGTAG CGGTCGTCGA CGGTACCCCT CGGCTGTATG GCTATCGCGC GTTGTCCAGC
TACCCGTTGG TCGTGGAAGC GGGGCTGTCG CGTGAATCCA TTGTCGCGCC CTGGCGGTAC
GATGCGATCA AGTCGGTGGC GGTCTTGCTG CTGTTGTTGG TGGGGCTGGC AGCGTTTGGC
GGTGTGGTGC TGCGCCAACT GCGCGAGCGG ATCGTGATCG AGCGGGCGCT GCTCCAGGCT
CACCAGACGC TGAAAGCGTT GGCCTTGACC GACAGCCTTA CAGGGCTGGG TAACCGTCGG
CGGCTGGATG GCGTGTTCGA ACCTGAACTG CGCCGTGCAC GGCGCCAAGG CTATCCCCTG
GCACTGGTGA TGCTGGACCT GGACTACTTC AAGGCCTACA ACGACCACTA CGGTCACCCG
GCTGGCGACC AGTGCTTGCG ACGCTTTGCC GAGGTGCTGC AACAGGCCTT GAAACGGCCG
GCCGATCTGG CGGTGCGCTA TGGTGGGGAG GAATTCACGC TGTTGCTGCC AGATACCGAT
GGCCGTGGCG CGGAACTGCT GGTGCAGGAG TTACAGCAGC TGTTGCGCCG TCAGGCGCTG
GAACATGCCG CCAGCCCATT GGGAAGGGTG TCTTTCAGTG CCGGGATCGC GGTGGTCGAC
CTGGCGCGGG AGGGGGGCAC TATCGAGGCG CTGGTCGCGG CGGCTGATGG GGCGTTGTAC
CAGGCCAAAC AGCAGGGGCG AGATGGGTAT TGCGTGGCCG GAAGTTTGGC GGCAGGGCAG
AATTGCTGA
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| Protein sequence | MCAARKQDDD GLFAISGEGR AVALFRLVLA FMLVVMLAFV LVEGWRIWRD YRFAYNNAEN
MVSNLARATA QHAEDAIRQV DAITGALAER LEGDGFDHID RPRLHALLAQ QKRIMPQLHG
LFVYGPDGSW IVTDQAAIPP KANNADRDYF AYHRSHNDPG VHIGSVVRSR STGDLIIPIS
RRLEHADGSF AGVLLGTIKV AWFVRYYGDF KIDERGALVL AKRDGTLLVR RPFVEQVIGR
SLANSEIFRN HLPYATEGVA EAVAVVDGTP RLYGYRALSS YPLVVEAGLS RESIVAPWRY
DAIKSVAVLL LLLVGLAAFG GVVLRQLRER IVIERALLQA HQTLKALALT DSLTGLGNRR
RLDGVFEPEL RRARRQGYPL ALVMLDLDYF KAYNDHYGHP AGDQCLRRFA EVLQQALKRP
ADLAVRYGGE EFTLLLPDTD GRGAELLVQE LQQLLRRQAL EHAASPLGRV SFSAGIAVVD
LAREGGTIEA LVAAADGALY QAKQQGRDGY CVAGSLAAGQ NC
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