Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2100 |
Symbol | |
ID | 1044952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2396018 |
End bp | 2399653 |
Gene Length | 3636 bp |
Protein Length | 1211 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637145514 |
Product | two-component sensor protein |
Protein accession | NP_744250 |
Protein GI | 26988825 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.349009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.142111 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTCATGG CCCGAGTTAT CAATCGCCTG CTGCTCGTCC TGCTGCTCAG CGGCGCGACA CAGGCTGGCC ATCGCGAAGC CGCGTCCTTT ACGCTACTGG CGCGCTCATC GGCCCGCCCC GTCCAGCCCG TGCTCACGCC CGAACAACGG CAATGGCGCG AAGGCCGGCA GGAACTGGTG CTGGGCACGT CGGCACCCGA CTATCCACCG TTCGACATCA CCGGTGGCGG CAACGACTAC CAGGGCCTGA CCGCCGAGTA TGCAAACCTG ATCGGCAAGG CCTTGCAGTT GCCAGTGAGG GTGCTGCGTT TCTCCAGCCG GCAGGCGGCG GTGGAGGCGC TCAGGCACGG TGATATCGAC CTGCTGGGCA GCGCCAATGG CTACGAAGCG GCCAGTGACG GCCTGGCACT GTCGCGCCCC TATGCCGTCG ACCAACCTGT ACTGGTAACG CGTGAAGACG AAAACCGGGC ACTGGACACG GACCTTGCCG GCATGCGCCT GGGCATGCTC TACCACTATT TGCCCAGACA GGAAGTACTC ACCGCCTACC CCAAGGCCGA GCTGCTGGCC TTCGGTTCTT CCAGCCAGGC ACTGAATGCT GTCGCGTTCG GGCAGGCCGA CGTGTTCATC GGCGATACCA TCTCCACACA CTACCAGCTC AACCGTGGTC ATCTGCCCCG CCTGCGCATG GCCAACTTCG GCAAACACGA GGCCATCGGC TTCGGTTTTG CCTTGCGTCA GCAAGATACC GTGCTGCTGG ACCTGGTGAA CACCATCCTG GACAGGCAAA GCCCGGCCAT TCGCTCCAGT ATCTTCAAAC GCTGGAGCGC CGGCAGCGAC CTGTTGCTGA GCGATCGCCA ACTGCAATTG AGCGCGGCCG AGCAGCAGTG GCTGGAGAAG CACCCCGTGA TGCGCGTGGC AGCCGATGAC GCGGCTGCAC CACTGTCCTA CTTCGATGAT TCGGGACATT TCCGAGGCAT CACCGCCGAC CTGCTGGAAC TCATTCGCCT GCGCACCGGG TTGCGTTTCG AAGTGCAGCG CGCCAGTGGC ATTGCCGACA TGGTCGCTCG CCTCAAGGAT GGCCGGGCCG ATGTCATCGC CGCACTGGCC AGCGCCGGCA AAGCAGGGGA CGACCTGCAA ATCAGCCGCC CCTACCTCGA AAGCGCCTAT GTGCTGGTCA ACCACAAGGA CAACAACGCA TTGAGTTCAC TGGAGCAGTT GCAGGGGCAT CGCATCGCCA TTACCCGCTA CAGCACCATG AACGCCATGC TGTCCCGGGA CTACCCAAAG ATAAGCTGGG TCGAAACCGA AAGCGCGTTC TACTCCATGG CGTTGCTCAA CAGCGGGGCT GTCGATGCGG TGATCACCAC CCTGATCGAC GCCAATCACG CCCTGGCCAG CAACCCAGAA CTGGTCATCC GCACCTCGGT CGGCAGCGAA CCCGCCAACT TCGCCATGGC CACCATTGCC CCGTCACCGG CGCTGTTGTC GATCCTCGAC AAAGCTTTGC TGAGCATCTC ACCGGAAGAG CTGGGGGTAA TCAACAACCG CTGGCGTGGC TTTGGCAGGC ATGAGGATGA CAACTCCAAA GGCTACAGCC GCCTGGCCCT GCAGGTGGTG CTGGCCACGG CCGTGCTTTT GTTGCTGGCC CTGCTCTGGA ATGCCCGCCT GCGCCTGCAG ATTCGCCAGC GCCAGCGCGC CGAACGCGCG CTGAACGACC AGTTGGCATT CATGCGCGCC CTGCTCAACG GTACGCCCCA CCCCATGTAT GTGCGCGACC GCGAGGGTTG CCTGAAAAGT TGCAACTACA GCTACCTTGA AGCCGTGCAG GCCCGCTCCG ATCAGGTGAT CGGCAAAAAA CTCAAGGACA GCCTGTTTGC CGATTCCGAG CAGGCTCGGC AGATCCAGGC GGATTACCAG AAAGTCATGG CGGCGGGCTC ACCACTGATC AAGGACCGTC CATTACGGAT CAAGGGCCGG GACCTGACCA TCTACCACTG GATCCTGCCG TACCGCGACT CCCTGGGTGA GGTGCAGGGG ATCATCGGCG GCTGGATCGA CATCAGCGAA CGCCGCCAAC TGGTCCTGGA GCTGCGCCAG GCCAAGCAGC AGGCCGACGA TGCCAACCGC GCCAAGAGCA CGTTCCTGGC GACCATCAGC CACGAAATCC GCACCCCGAT GAATGCCGTG ATCGGCATGC TGGAACTGGC GGTCAAGCGC GCCGACCAGG GCCGGGTGGA CCGCAGCGCG CTGGAACTGG CACACCATTC GGCCAAAGAC CTGCTAGGCC TGATCGGTGA CATTCTCGAC ATCGTGCGCA TCGAGTCCGG GCACTTGTCC CTGGCCCCGG AGGTGGTCGA CCTGGCGGCG CTGGTCGAAT CGGTGGCGCG CATTTTCGAT GGTCAGGCGC GGCAGAAAGG CCTGGCCCTG GAGGTGCAGA TCGCCCCGGC CGCACGCTGC CATGTCCTGC TTGACCCGCT GCGCTTCAAG CAGGTGCTGT CCAACCTGGT GAGCAATGCC ATCAAGTTCA CCGAGCACGG TCAGGTGCGC ATCAGCGTCA GGCTGCTGGA TGACGGAACC AGCACACCAG CCGTACTGGA GCTGGAGGTG CGCGACAGTG GCATCGGCAT CCACCCCGAC GACCTGCAGC GCCTGTTCAA CCCGTTCATC CAGGCCAACC CGCACAGCCA GGGCGCCCGC GCCGGTACCG GGCTGGGCCT GGCCATCTGC CGCAACCTGT GCGAAATGAT GGGCGGCAGC CTGTCCATGA AGAGCCTGGA GGATGTCGGT ACCCAGGTGC GCCTGAAGAT GCCGCTGCAA CGGGTGGATG GCGCAGAGCA GCCCAAACCG CTGCCCGAGC AGCTCGACGT GCCCGACCCA CGGCTGAACG TGCTGGTCAT CGATGATCAC CCTGCCAACC TGCAACTGAT GGCGCAACAA CTTGGCTACC TGGGCCTGGA GCACGCCAGC GCCCGCGATG GGCAGGAAGG CCTGGCGACC TGGCGGGAAG GCGACTTCGA TGTGCTGGTA CTCGACTGCA ACATGCCGCA CATGAACGGT TACCAGCTGG CGACTGCCGT GCGCGCCGAA GAACGCCATG GCAAGCGACC ACCCTGCACC ATCCTCGGCT ATACCGCCAA CGCACAGCCG GAAGTACGCC GCAAGTGCCT GACCGCCGGC ATGGACGACT GTCTGCTCAA GCCCATCAGC CTGAGCACCC TCAGCCAGCG CCTGGCTGGC ATTCGCCCGC GCCGCCAGCA ACGCCCCCGA CGCAAGCTGT ACCAGCTGGA CGGCCTGGCC GCCGTGGTCG GGCCTGACCC GGTTGACCGT CAGCGCTTCC TGGAAACCTT GCACCAGAGC CTTCAGGCCG ACCTGGCCAG CCTGATGGCG CTTCACCCGC AACACGACAG CGGCGCCATT GCCGAGCAGG CCCACAAGGT GCTCAGCGCC GCGCGCATGC TGGAAGCCCC TGACCTGATG GCGGCCTGTG AAGCCCTCGA GGCCAGCGAC TTGCCCACTG CCCAGGTGCG CCTGCGGCGC CAGGCACTGG CACGGCATAT GTGCCGAGTG GAACGTGCCC TGGCCAAGGA ATTGGCCACA AGCACGGATA CTCAGGCAGG CAACCACACG TGTTAA
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Protein sequence | MVMARVINRL LLVLLLSGAT QAGHREAASF TLLARSSARP VQPVLTPEQR QWREGRQELV LGTSAPDYPP FDITGGGNDY QGLTAEYANL IGKALQLPVR VLRFSSRQAA VEALRHGDID LLGSANGYEA ASDGLALSRP YAVDQPVLVT REDENRALDT DLAGMRLGML YHYLPRQEVL TAYPKAELLA FGSSSQALNA VAFGQADVFI GDTISTHYQL NRGHLPRLRM ANFGKHEAIG FGFALRQQDT VLLDLVNTIL DRQSPAIRSS IFKRWSAGSD LLLSDRQLQL SAAEQQWLEK HPVMRVAADD AAAPLSYFDD SGHFRGITAD LLELIRLRTG LRFEVQRASG IADMVARLKD GRADVIAALA SAGKAGDDLQ ISRPYLESAY VLVNHKDNNA LSSLEQLQGH RIAITRYSTM NAMLSRDYPK ISWVETESAF YSMALLNSGA VDAVITTLID ANHALASNPE LVIRTSVGSE PANFAMATIA PSPALLSILD KALLSISPEE LGVINNRWRG FGRHEDDNSK GYSRLALQVV LATAVLLLLA LLWNARLRLQ IRQRQRAERA LNDQLAFMRA LLNGTPHPMY VRDREGCLKS CNYSYLEAVQ ARSDQVIGKK LKDSLFADSE QARQIQADYQ KVMAAGSPLI KDRPLRIKGR DLTIYHWILP YRDSLGEVQG IIGGWIDISE RRQLVLELRQ AKQQADDANR AKSTFLATIS HEIRTPMNAV IGMLELAVKR ADQGRVDRSA LELAHHSAKD LLGLIGDILD IVRIESGHLS LAPEVVDLAA LVESVARIFD GQARQKGLAL EVQIAPAARC HVLLDPLRFK QVLSNLVSNA IKFTEHGQVR ISVRLLDDGT STPAVLELEV RDSGIGIHPD DLQRLFNPFI QANPHSQGAR AGTGLGLAIC RNLCEMMGGS LSMKSLEDVG TQVRLKMPLQ RVDGAEQPKP LPEQLDVPDP RLNVLVIDDH PANLQLMAQQ LGYLGLEHAS ARDGQEGLAT WREGDFDVLV LDCNMPHMNG YQLATAVRAE ERHGKRPPCT ILGYTANAQP EVRRKCLTAG MDDCLLKPIS LSTLSQRLAG IRPRRQQRPR RKLYQLDGLA AVVGPDPVDR QRFLETLHQS LQADLASLMA LHPQHDSGAI AEQAHKVLSA ARMLEAPDLM AACEALEASD LPTAQVRLRR QALARHMCRV ERALAKELAT STDTQAGNHT C
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