| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1797 |
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| Symbol | |
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| ID | 1043306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2018723 |
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| End bp | 2020048 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637145199 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_743952 |
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| Protein GI | 26988527 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.250049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0164192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTA AAGCAATCAC TACGTTCGAC CACAATTTCG ACGACCTGCC AACGTCGGAT
CGCGGCATCC GCCGCATCGG GCTGACCGTT GTCTTTGTCA CCTTCGGCAT TTTCGGCACC
TGGGCAGCTT TCGCGCCTTT GAGCAACGCC GTGCACGGCA CCGGCGTGGT TACGGTGCAG
AACTACCGCA AGACCGTTCA GCACCTGGAG GGTGGCATCG TCAAAGAGCT GCATGCCCGC
GATGGGGACC TGGTGAAGAA GGGCGATCCG CTGATTGTGC TGGATGAGTC GCAGCTCAGC
GCCGAGTATG AGTCCACCCG CAACCAACTG ATTGTTGCCC GTTATAAAGA GGCACGCCTG
CGTGCCGAGC GTGACGGCTT GGACTCGATC CCGTCGGTGA TAATGGAAGG TACCGATTCT
GACCGCGCGC AAGAAGCGCT GGCAGGTGAG CAGCAGGTGT TCAAGGCCCG CCACGATTCG
TTGCTGGGCG AAATCTCGGT CAACCGTGAG CGGATCCAGC AAATGCAGCA GCAGATCGCC
GGTCTGAACG ACATGATCCG CACCAAGGCA GGCCTGAACA AGTCGTACTC TGGCGAAATC
AAACAGTTGA AGGAGTTGTT GGCCGAAGGC TTTGTTGACA ACCAGCGTTT GCTGGAGCAG
GAGCGCAAGC TCGACATGCT GAAGACTGAA GTGGCTGACC ACCAGTCGAG CATTACCAAG
ACCAAACTGC AGATCGGCGA GACCGAACTG CAGATCGTGC AGTTGAAGAA GAAGTTCGAT
GCCGACGTGG CCAAGGAGCT GTCGGACGTT CAGGCTCAGG TGTTCGACCT GCAGGAAAAA
GAAGCAGCGT TGCGTGATCG CTTGTCACGG GTGGTGATCC GCGCGCCGGA AAGCGGCATG
GTGCTGGACA TGAAAGTGCA CACCATTGGG GGCGTGGTCA GTGCAGCTAC CCCTTTGCTG
GATATCGTGC CAGCTCAGTC GGATCTTGTG GTTGAAGCCA AGGTGGCCCC TCGGGACATC
GACCGATTGG AGCTGGGCAA GACTGCGGAC GTCCGCTTCT CTGCGTTCAA CCAGGCCACC
ACGCCGGTCA TCGAAGGTAA GTTGACGCGG ATCTCGGCCG ACAGCCTGGT CGAAGAGCGC
TCGGGGGACC AGTACTACCT GGTCCGCGTC AAGGTCACTG AAGACGGCAT GAAAAAACTT
GGCAACCGCA AGCTTCAACC CGGCATGCCA GCTGAAGTCC TCATCAACGC AGGCGACCGC
ACCATGCTGC AGTACCTGTT GAAACCAGCG CGCAACATGT TCGCTGAATC GCTGATCGAG
GAATGA
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| Protein sequence | MSSKAITTFD HNFDDLPTSD RGIRRIGLTV VFVTFGIFGT WAAFAPLSNA VHGTGVVTVQ
NYRKTVQHLE GGIVKELHAR DGDLVKKGDP LIVLDESQLS AEYESTRNQL IVARYKEARL
RAERDGLDSI PSVIMEGTDS DRAQEALAGE QQVFKARHDS LLGEISVNRE RIQQMQQQIA
GLNDMIRTKA GLNKSYSGEI KQLKELLAEG FVDNQRLLEQ ERKLDMLKTE VADHQSSITK
TKLQIGETEL QIVQLKKKFD ADVAKELSDV QAQVFDLQEK EAALRDRLSR VVIRAPESGM
VLDMKVHTIG GVVSAATPLL DIVPAQSDLV VEAKVAPRDI DRLELGKTAD VRFSAFNQAT
TPVIEGKLTR ISADSLVEER SGDQYYLVRV KVTEDGMKKL GNRKLQPGMP AEVLINAGDR
TMLQYLLKPA RNMFAESLIE E
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