Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1072 |
Symbol | |
ID | 1044672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1226819 |
End bp | 1231138 |
Gene Length | 4320 bp |
Protein Length | 1439 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637144467 |
Product | leucine-rich repeat-containing protein |
Protein accession | NP_743233 |
Protein GI | 26987808 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACCGC ACCGGCTCCC GAACGATTCC ATCGATAGCC TGATCGCCCA GAATTTGCCT GGATGGCTAG TCGACCACGC CCAACCGGAA AGGCTCGATG CGTTACGTAA TGCCCTGAGT CGCCAGGCGC ACTGCAATGC GCGGCTTGGC CCGATCCTCC AGGCCATCCC TTCTTTGCAG GCCTACGCAG CAGCGTTGCT CAAAACGAAA CTGCGCAAGA GCGGCTTCAG CAACCCGGAC GTGACGGGCT GGAGGGTACG GGTCTCGCAG CGGCTGTTGC TGCCCAGCGC TTCGCCTGTG CTGCTGCGGC CCACCTATGT TCGCCGCTCC AGGCGGTCAT TGCTGGAGGC GGCGCTGCAT AACTATCATC GCAGGGAGAC ACGCCCCGGG CTCACGCTCA AAGGTGAACT GGTCGATGGC AACGGTAACC GCCTGCCGAT GAGCTTCCAC GCGTTTGCCT CCGCATGTCG CGAGGTCGAC GCAGGGGGCA AGTACCAGGC GTTGCTCACC CACCATCTAC AGCCTGAAGA TGGCCCGGAG GATGAGCCGG GCCAGGCCGT TTCCCGCTTG CACGGTCTTT TCGAGGCGAG TTTCAAGGCC CATTTCGAGG TGGCGATGCG GGTCGCTGCG TTGAAACAGG ACATTGACGA GCGCACGTAT TTTTTTCTGT TGCCACTTAT TGCCGATAAG CCGGTGGTGC CTGCGCTGGT GGGCACTGTG GTGCCCCGAC AGTTGTACCT GCTGGGCCGC CCGGTTCAAG GCGTGCTGAC GCTGGAAGTG CGTCCGTCAG CTGACGCAGT GGAGTCGGTG GTGCTCTGGA TACCCGATGA CCCTCATCAG CCCGTCTCCC GTCATGCCAG CTGGGATGCA CTCGACAAGT ACCTCGGTAA GCGCTTCCGT ACGCCGGCCT ATCGGCGCTT TTTCGCGCGC TTCATTACCG AGCGTGAGCG CATCAATTTC TATCGGGTAT TGAACGAGCG GGTCGCGCAG GCATCGACAG CCGGGGTGGA ACTCGACGCC CGTTCTGCAC CGATCACTGA CGCACCGTTC GTACACCTGC GTCGGCAATG CCTCGCCAAG ATCAGGGATG ACGCCAGGGT GCTCGCCGTG CCCACCGATG TCGAAGATGA CGAAGACCGT GAAGCGCGCA TGCAGGGCTA CAAAGAGCTG GGTTTGAATG TGCTGAACGT GGCGGGGGCG TTCGTGCCTG TGCTTGGCGA AGTGCTGCTG GTGGCAAACG CGGTTCAGAT TGCTGACGAA GTTTATGAAG GGTATGAAGA TTGGCGCATG GGTGACCGCG AAGGGGCGTT GAACCACCTG TTCAACGTTG CCGCAAACGT CGTGGTCGGC GGGATGATCG CAGCTGGCAG CAAAGTGGCC GTGCGTGCCC TTGAGCGTCT GGCCTTCGTG GATGACTTGG CACCGGTGTG CAACTCCGCA GGCAAGGTCA GGCTCATGGC CACGGATCTG CCCGGTTACG ATGCCCAACC GTTGCGGGGT GTCGGCGCAC AGGAATGGTT GTGGCACCTT GATGAGGGGC GTTATCGGGT GATGGAGGAT CCGCAGGATG GTCGCTCCAG GATCCTGCAC CCTGGTCGTC CCAGTGCCTA TCGCCCTGTG ATCGAGCAGA ATGGTGCCGG TGGCTGGCGC CATGAACTCG AAGCTCCACA GTACTGGGAA GGGCGGGCCA ATCTGATACG CCGTTTGAGT ACGCCCCTGG CAGAGCTACC GGAACCGACA TGTGACTACC TGCTCCAGGT GACAGGGCTG AGTGAAGCGC AGATTCGCCG TTTGCACGTC GAGCACATGG GCGCACCTGC ACGGTTGCTC GATGCCCTGG AGCTTTATCA GGCACATGAA TTACACCCGG ACTTCAGCGC GCCGCGACTG GCGCAGTACG TTGCTGATCG GCAAGTGCAG CCCAATGGCA TCGAGCGGAT ACTGCGGCGC ACTTTCCCCG GCCTGTCGGC TCGCTGTACC CGTGAGCTGC TTCAGCAATG CAGCGGTGCG CAGCTCGATA CGCTCAGCAA CGCGCAGCGG ATCCCTTTGG CAGTGGCCGA GCGTGCACGA TGGTCGCTGC GCGAAAGCCG TCTGGACAGG GCCTGTGCCG GTTTGCGCCT GCCGCGTTGC GTCAATCCGG ACACCGAACG CCTGGCTTTG GGCTTGCTCG AGCGTCAGCT GAAATGGCCG GACACCCTGC GCATCGAACT GCGCGAAGGT AGCCCGAGTG GCCGGTATCT GGCCGGTATC GGCGCAGAGT CTGCGCAGGA TGTACGGTGT ATCGTGCGCC GCGGCGACGG CTATCGCTAC GCCGGTCAAG GTACATCCGG CCCCTACCTG GCGGCACTGT TGGCTGCGCT GGACGAGACG CAGACAGCCG ATCTCGGCGA TGCCGCTGTC AGTCCAGGCG CCCTGGGCTC GTTGCTGATC GAGGCCGCTG CCGGTGATCG TACCCAAGCG GCTGAGCTCT GTGGCATGCC GCGTCTGGGC GTTGGCCTGC GACCCCCGAC CCGTTTCGGG GATGGGCGTA TCGGGTATGC CTTGAGTGGG CGAGGCGAGA GCAGTCGGCG TGCCATAGGG CGTGGTATTC ACCAAGTGTT TCCGACGATG ACAGACGGGG AGCTACAAGC CTATCTGCTT GACCTCATGG AGCGGCGAGT AGGGTTGTGG GAGCACTACA GCCAGCTGAC GGGGCAGTTG GCGCGCCTGC GTCAGAGCCT GCGCCAGTGG CGCAGGGATG CCAGTAACCC ACTGGACGCT TTACGCCGCC GTCGGGTCGC TACTGCCGTA CGGCGAAGCT GGCGGCGCAA GATAACCGAC GAGGCCGGGG ACTACGCGCT GATCATCAGC GGAGAGCGTA TCGGGAGTCT GCCCGAATTA CCGGAGGGGG TGAGCTTTGA TCATGTGCGA CGGCTGATCC TCAGTGATCT GGGCCTTGGT GAAATCAATG CGGACTTTCT TCGCCGTTTT CCCAACCTGA TTGAACTCGA CCTGTCCGGC AATCGCCTGA CTGCGATCCC TCACGGCATT GAACATATGC CCCGCCTGCG GCAGCTGAAC CTGCGCCGTA ACAGCGTGAT AATGGATGAG GCCGGTGAAT TGCGTCTTGC CGGGATGAGT GCGCTGCGGT ACCTGGACCT CAGCCACAAC CCGTTGGGAA GGGCGCCGGT ACTGACGCGC CTGGGCAATT TGCGTGAAGT CAACCTGCGC TCTGCTGGCC TTGAGGCGTT GCCTGAGCAG ATCTCATTTC GTGCCCATGT GGACGTGCGT AACAACAACA TTCGCACACT GCGCCGAGAG TTGCAGCAGC TGCGCCGGCA GGTGCACCAG TTGTCCTTGC ACGATAATCC ACTTGGCGAA GCTGACGCAT TGCTGCTCGA TGAGGCACGA GGTGTGGCCC CGGGCCAGTG GGGGTCAGCG TCCGCACGCC ATCGCGCCAT TGACAGTGAC CTGTTCAATA CCTGGGCCAA CAGCACAGCC GACGCTGAAC GTGATCGCCA GCAGGCCATA TGGACAGCGC TGCTTGAGGA ACCGCACTCA GATGGAATGT TCCGCTTTCT GGCAGACTTC GTCCACGGCG AGGACTTTGA ACAGCACCCT GGGCATTACC GCAGCCGAAT CTGGCGAATT CTGGAAACGT GTGAGCAGCA CGAGCAGTTG CGTCACCAGT TGTTTCTCGA GGCGTCTGGT CCACGCAGTT GTGAAGACCG CCTGCTGCTG TTGCTGGAGC AGATGGAGCT TGGGGTTCTG GTGTTGCGCG CCGTCGAAGA CGCGCATGGC AGTCGGATGG AAGCTCGCTT GCTAAGCCTG GCGCGTGGTT TGTTTCGCCT GGACGAGGTT GACCGCCACG CGACGTTGCA CGTGCAACGC ATGCATGCCG AGCACGCCCC ACATATCGAT GAAATTGAGA CAAGGCTGTT TTACCGACAG CGGCTTGCGC GTCCATTGGG CTTGCCGATC GAGCTCGACG AAATGCACTA CCCAAGTTTT GCAAACGTGA CCACCAGCAA CCTGCTGCGG GTCCAGGACG CGGTTTTACA AAATGAGTCG ACGGATGCCC TGATTGCCTC GCTGGCACAG CGGCCTTTCT GGGAGCAATA CGCGCGCGAG TTTCATGCGC AGCGATTTGA AGACCTGGTA CAGCCACTGC ACCAGCGTAT GGAGGCCCTG CAGGCTCAGG TAGATGAGCA AGTGATCAGC GAAAACGAGT TTCTGCAACG CTGTGAAGCA CTGAAGGCTG ATTTCGATCG CAGCGAGCGG GCATTGCTGG CGCGGTTGGC GCGTGAAGCC TACGAGCGCT GGGCGAATAC GCCCCCTTGA
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Protein sequence | MSPHRLPNDS IDSLIAQNLP GWLVDHAQPE RLDALRNALS RQAHCNARLG PILQAIPSLQ AYAAALLKTK LRKSGFSNPD VTGWRVRVSQ RLLLPSASPV LLRPTYVRRS RRSLLEAALH NYHRRETRPG LTLKGELVDG NGNRLPMSFH AFASACREVD AGGKYQALLT HHLQPEDGPE DEPGQAVSRL HGLFEASFKA HFEVAMRVAA LKQDIDERTY FFLLPLIADK PVVPALVGTV VPRQLYLLGR PVQGVLTLEV RPSADAVESV VLWIPDDPHQ PVSRHASWDA LDKYLGKRFR TPAYRRFFAR FITERERINF YRVLNERVAQ ASTAGVELDA RSAPITDAPF VHLRRQCLAK IRDDARVLAV PTDVEDDEDR EARMQGYKEL GLNVLNVAGA FVPVLGEVLL VANAVQIADE VYEGYEDWRM GDREGALNHL FNVAANVVVG GMIAAGSKVA VRALERLAFV DDLAPVCNSA GKVRLMATDL PGYDAQPLRG VGAQEWLWHL DEGRYRVMED PQDGRSRILH PGRPSAYRPV IEQNGAGGWR HELEAPQYWE GRANLIRRLS TPLAELPEPT CDYLLQVTGL SEAQIRRLHV EHMGAPARLL DALELYQAHE LHPDFSAPRL AQYVADRQVQ PNGIERILRR TFPGLSARCT RELLQQCSGA QLDTLSNAQR IPLAVAERAR WSLRESRLDR ACAGLRLPRC VNPDTERLAL GLLERQLKWP DTLRIELREG SPSGRYLAGI GAESAQDVRC IVRRGDGYRY AGQGTSGPYL AALLAALDET QTADLGDAAV SPGALGSLLI EAAAGDRTQA AELCGMPRLG VGLRPPTRFG DGRIGYALSG RGESSRRAIG RGIHQVFPTM TDGELQAYLL DLMERRVGLW EHYSQLTGQL ARLRQSLRQW RRDASNPLDA LRRRRVATAV RRSWRRKITD EAGDYALIIS GERIGSLPEL PEGVSFDHVR RLILSDLGLG EINADFLRRF PNLIELDLSG NRLTAIPHGI EHMPRLRQLN LRRNSVIMDE AGELRLAGMS ALRYLDLSHN PLGRAPVLTR LGNLREVNLR SAGLEALPEQ ISFRAHVDVR NNNIRTLRRE LQQLRRQVHQ LSLHDNPLGE ADALLLDEAR GVAPGQWGSA SARHRAIDSD LFNTWANSTA DAERDRQQAI WTALLEEPHS DGMFRFLADF VHGEDFEQHP GHYRSRIWRI LETCEQHEQL RHQLFLEASG PRSCEDRLLL LLEQMELGVL VLRAVEDAHG SRMEARLLSL ARGLFRLDEV DRHATLHVQR MHAEHAPHID EIETRLFYRQ RLARPLGLPI ELDEMHYPSF ANVTTSNLLR VQDAVLQNES TDALIASLAQ RPFWEQYARE FHAQRFEDLV QPLHQRMEAL QAQVDEQVIS ENEFLQRCEA LKADFDRSER ALLARLAREA YERWANTPP
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