Gene PMN2A_1744 details

Gene Information

• Locus tag: PMN2A_1744
• Symbol: rpsD
• ID: 3607154
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL2A
• Kingdom: Bacteria
• Replicon accession: NC_007335
• Strand: -
• Start bp: 411191
• End bp: 411799
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637688635
• Product: 30S ribosomal protein S4
• Protein accession: YP_292935
• Protein GI: 72383580
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAGAT ACCGCGGACC TCGTTTGAGG ATCACGCGAC GCTTGGGAGA CCTACCTGGT 
CTCACCCGGA AGGCCGCTAA AAGGTCTCAT CCACCAGGTC AGCACGGCCA AGCCCGTCGC 
AAGCGCTCTG AATACGCGAT CCGACTCGAA GAAAAGCAAA AACTTCGATT CAACTATGGT 
ATTTCTGAAC GCCAGCTTGT TCGCTACGTA AAGAAAGCTC GTGCTCAGGA GGGTTCCACA 
GGAACAAATC TCTTAAAGCT TCTGGAAAAT AGGCTTGATA ATGTTTGTTT TAGACTTGGG 
TTTGGGCCTA CAATCCCAGG CTCAAGACAG CTAGTAAACC ATGGACATGT AACTGTTAAT 
GGCAGGATCA CTGACATTGC AAGCTACCAA TGCAAGGCTG GAGATGTTAT TGCTATCAGA 
GACAACAAAG CTAGTAAGCA ATTAGCTCAA GCCAACTTAG AATTCCCAGG TCTTGCGAAT 
GTTCCTCCAC ACCTTGAGCT TGATAAAACC AAACTCTCGG CAAAGATATC TGCAAAGACA 
GATAGGGAAT GGGTTGCTAT TGAAATTAAT GAATTGTTAG TTGTTGAGTA TTATTCAAGA 
AAGGTATAG 

 

Protein sequence

MSRYRGPRLR ITRRLGDLPG LTRKAAKRSH PPGQHGQARR KRSEYAIRLE EKQKLRFNYG 
ISERQLVRYV KKARAQEGST GTNLLKLLEN RLDNVCFRLG FGPTIPGSRQ LVNHGHVTVN 
GRITDIASYQ CKAGDVIAIR DNKASKQLAQ ANLEFPGLAN VPPHLELDKT KLSAKISAKT 
DREWVAIEIN ELLVVEYYSR KV