| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90571 |
|---|
| Symbol | DHH1 |
|---|
| ID | 4840004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 244211 |
|---|
| End bp | 246454 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640391319 |
|---|
| Product | RNA helicase of DEAD box family |
|---|
| Protein accession | XP_001385738 |
|---|
| Protein GI | 126138430 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0907295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0189546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TACATCTCAT CTATTAGATA TTTAGTGTTA CAAGCAGCGG TATTGTCCAA TTCCAACTTG
TACAAATCCA TCGATTCCAT AATCAAATCT TTTGGTCCTT TTTCATCATC AAAAGCATTC
GTAGAGTTCA TTTCGTTCTC ATATTGTCAT ATTAATCGAA GAAAACCGAC AAATAACCAT
TTCCAACTCA AAGATTTTAG ATTCGGCTAT TACTATTCAA CGAATCAATT CTTGTGATTA
ACTTCAATTG CACCCCATAG AAACAGCCCA TATTTGTTCT GTACACTGTT TACTTCTTGT
ATTATACATT CGCCTTCTGC ATTACATTAG GTTCACCAAA GCTATACATC GCTTGTCATA
GTTCCTTATT TCACTATTGT TATTATTCGT TTCACATAAA GTCATTAATC ATATACAGAT
ATTACTCACA TTAAAATGTC TGAACAAAAC TGGAAACAAA ACTTGAACCT TCCACAGAGG
GATACAAGAC CACAGACCGA AGATGTCTTG AACACAAAGG GTAAGTCCTT TGAAGACTTC
AATTTAAAGA GAGAATTGTT GATGGGCATT TTTGAGGCGG GATTCGAGAA GCCTTCGCCC
ATTCAAGAAG AATCCATCCC AATGGCTTTG GCAGGAAGAG ACGTCTTGGC CAGAGCTAAA
AACGGTACTG GTAAGACTGC ATCGTTCATC ATTCCATCAT TGCAACAGAT CAAACCCAAG
TTAAACAAAA TTCAAGCCTT GATCTTGGTG CCAACAAGAG AGTTGGCATT GCAAACATCC
CAAGTTGTGA GAACCTTAGG AAAACATTTA GGCATTCAAT GTATGGTGAC CACTGGTGGT
ACTTCCTTGA AGGATGACAT CTTGAGATTG AACGATCCCG TTCACGTTTT GGTCGGTACT
CCTGGTAGAG TTTTGGATTT GGCTGCCAGA AGCGTTGCCG ACTTGTCGGA ATGTCCCTTG
TTTGTTATGG ACGAAGCCGA TAAAATGTTG TCCAGAGAAT TCAAGGGCAT CATTGAGCAA
ATCTTGGAAT TTTTCCCCAA GAACAGACAG TCCTTATTAT TCTCTGCTAC TTTTCCGTTA
GCCGTCAAGT CCTTCATGGA CAAGCACTTG AACAAGCCCT ACGAGATTAA CCTTATGGAC
GAATTAACGT TGAGAGGTAT CACTCAATAC TACGCATTTG TTGAAGAAAA GCAGAAGTTG
CACTGTTTGA ATACTTTGTT CAGCAAATTA CAAATCAATC AGTCTATTAT CTTCTGTAAC
TCTACCAACA GAGTTGAATT GTTGGCCAAA AAGATCACTG AATTGGGCTA CTCTTGTTAC
TACTCGCACG CCAAGATGCC CCAACAGGCA AGAAACAAAG TTTTCCATGA ATTTAGACAA
GGAAAGGTCC GTAACTTGGT CTGCTCTGAT TTATTGACCA GAGGTATTGA TATTCAAGCT
GTCAACGTTG TCATCAACTT TGATTTCCCA AAGACTGCCG AAACCTATTT GCATAGAATT
GGTCGTTCAG GTAGATTCGG TCACTTGGGT TTGGCCATTA ATTTGATGAG TTGGAATGAT
CGTTACTCCT TGTACAAGAT TGAACAAGAA TTGGGTACTG AGATCAAGCC AATTCCAGCT
ACCATCGACA GAAAGTTGTA TGTTGCTGAT AACGAAGATG CTATTCCCAA ACCATTCAAG
ATTGAACAGT TGCCAAAAGG TAACGAGAAG GTTCATACCA GAGCTGGCTA TGAGTACAAA
GGCCAGCCTG AAGTTCAATC GGGCCAGCAA CACGCCCAAC AACAACTCCA ACCTTCACAA
CAACCCCAAC AACAACTCCA GCAACCACAA CAACCACAAG CTGCTCCTCA AGGTTACCCA
CCAGCTTTCA ATGGCTATCC ACCATACCAG CAATACCCAC CCCAAGCTGG CGGGTACCCT
CCACCACAAT TCAACGGCTA CCAAGCAGCT CCTGGTCAAC AGTAGTTGAA TTATGAGTTC
TAACATTTTT ATTATGATAT TTTTGTTGTT TTACGATAGG AACGATCTGC AAATCCATGT
TTGAAAATGA ATCCGTTCCA TAATGGATCT GAATACTGGC TGATCTTTCC TATCACTATT
CTAAATTAGA AGAAAGTTGA CACACATGCC TAGTATGGAG ATATTGAAGC TACAACAGTT
AATGGCTGCA ATGGCTACAT TTGTAGTGTG TATTCTTTTT TCTGTTTTTC ATTAGTAACT
AGTCAAATAG ATAGTTCGAT GAGG
|
|---|
| Protein sequence | MSEQNWKQNL NLPQRDTRPQ TEDVLNTKGK SFEDFNLKRE LLMGIFEAGF EKPSPIQEES
IPMALAGRDV LARAKNGTGK TASFIIPSLQ QIKPKLNKIQ ALILVPTREL ALQTSQVVRT
LGKHLGIQCM VTTGGTSLKD DILRLNDPVH VLVGTPGRVL DLAARSVADL SECPLFVMDE
ADKMLSREFK GIIEQILEFF PKNRQSLLFS ATFPLAVKSF MDKHLNKPYE INLMDELTLR
GITQYYAFVE EKQKLHCLNT LFSKLQINQS IIFCNSTNRV ELLAKKITEL GYSCYYSHAK
MPQQARNKVF HEFRQGKVRN LVCSDLLTRG IDIQAVNVVI NFDFPKTAET YLHRIGRSGR
FGHLGLAINL MSWNDRYSLY KIEQELGTEI KPIPATIDRK LYVADNEDAI PKPFKIEQLP
KGNEKVHTRA GYEYKGQPEV QSGQQHAQQQ LQPSQQPQQQ LQQPQQPQAA PQGYPPAFNG
YPPYQQYPPQ AGGYPPPQFN GYQAAPGQQ
|
|---|
| |