Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_84973 |
Symbol | SLN1 |
ID | 4840041 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 977559 |
End bp | 981853 |
Gene Length | 4295 bp |
Protein Length | 1168 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640391356 |
Product | histidine kinase osmosensor Osmolarity two-component system protein SLN1 |
Protein accession | XP_001385881 |
Protein GI | 150866326 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.656577 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | AAATAGTGCA GTTTATCTGG CCGTGTTTGC TTCGTTATAT CTTTGCTAGT ACTGCTTGAA ACTATTACAA TCAGTTCCAC CTCTTCTGTT TGTTTGCGCC TTGTTGCCTT TGTTTGCCAG AACCAACAAT ACCATACAAG ATACAACACT CAGATCAGAC CCACTACACT TGCTTTGAAA AGAGTCAAAC ATATCTACTT ATAAGGACAA CTGATCGTGA TCATTTGAAT ACTTCGGCTG GTTATCTCCT TTTCGATATC TATTTCGAGC CAGACACTAA TCTCACATTC ATCGAATCAA ATATATATGA CAGACCAACA CTGGGTATAG CCTTCGTTAC ACATTCGAAA TGAGACGATT AAAGATCGGT ATCAGACCCC AGTTGATCAT ACTTGTGGGG TTTGCGTCCC TTTTCTCGCT CTTGATCTTG GCTATCGTCA CAGCAGTGTA TTTCTCCTCT AATTTGAGTG ATTTGAGAGC AGAACGTTTG GAAGTCATCT CCCAACTTAA AACAACTCAG GTCAGGCAGG CCGTAGAATA TATATACTAC CAGGTGTATT GGTTGACTAC TAAGGATTCC ATATACGCTC CATTATCTTC CTATAGAGCT GGTAATATCA CCACATCCAT ATTCAGCGAA GCTCAAAACA CACTTGACCA GTTCTTAATA TCTTCAGAGC TCTTTGCTGC CGCCAGATTA TATAACTTAA ATTTGGAAAT CGTTGCCGAA AGCTATAATA ATGCCACATC GATTTCACAA CCGGCCATGG ATTTCTTGTA TCCGTTGGCG CAAAACGCCA CGATACCCCA ATCATTGCTA CAACAATCAA GCAATAATGT CGAACCTTAC TTCACAGGTC CAATAGGGAA CAGCACAGAC CCAAACTCTG CATTTTACAT GGGTATCACT TTGCCTATAT ATTCAAACTC GTCCATCATT TTGGACGACC CTTCATTATC AGGTTACTTA ACCGTCATTG CATCAGCCCA GAGCATCCAA GCAGCTATTA ATGACACTAC TGGGTTTTCG AACAATTCAT CCGCTGATTA CATTGTCATT GCTCTTCGTC CAATCTATGG CGACGTTGAA GACGGTGCGA CCACCTTCAA TTCCGACGAA ACAGGTCAAG TAATCGGTTT CCAAACCGTT TTCCCAGTTA AGGACAATAT TTTATCACCT AACAATGTTT ACAATATTAA CGATTCTTCG CTGGTGAAGG AGGCATTTTC AAGGACATAT GGATCTGCTA CCAACGTCAG GTCAATTACG GGCAAATATG TTGCAATAGG CTTCAACCAG ATTCTATTAG ATTCCACCAC AAGATGGGCG GTGATTATTG AGCAAGCAAG ATCTAAATTT TTGCAGCCTG TCAACAATTT AAGAAAAATA ATCATTGGTG TTGTTATTGG AATTGGTGTG TTCATGTGTC TTATTACATT CCCATTGGCA GTTTTCTTTA TACGACCAAT TACAAAGCTT AAGGAAGCAA CGGAAGCGAT CACGAAGTCA AAGAAACAGT TTAAGCAGCA AAAAGATAGG GATAGTTCGG CTGCGAGTCC AATACCTTCA TCCAACCCTC CTCCTCCGTA TACCACATTG AATCACAGGC ATAAGAGAAA CAGCGTGAAG TCTACGTCTA ACACCAGTAC CTCTGGTTCC TTGTATTCGA CGGCAATTAG ACTTCCAGGT AGAATTCCAA ACTCAAAGAA GTTCTTCAAA GATGAATTCA CTGAGCTTTC TGAGGCTTTC AATATCATGA CAGAAGAACT CGACAAGCAG TACACGCATT TGGAAGATAG AGTGAAATTG AGAACCAAGG AATTAGAAGC GTCCAAAATC GAAGCAGAAT CTGCGAATGA AGCGAAGACT GTATTCATTG CTAATATTTC TCACGAATTG AGAACTCCAT TAAACGGTAT TTTAGGAATG ACTTCGATTG CCATGGATGA AGAGGACCAA ACAAGAATTC AAGATTCCTT GAAGTTAATA CACAGATCAG GAGAACTTTT ATTGCATATA TTAACCGAGT TGTTGACCTA TTCCAAAAAT ACTTTGAATA GATCTAAATT GGAAAAGTCT AATTTTCAAA TTTTAGAGGT TGTTTACCAA GTGAAATCCA TTTTCAGCAA GCTTGCCATG GACCAAAGAG TAAATTTCAA GATCTGGGTT CGCCCCAACA TTTTCAGAAA GTTGATCCTA TATGGAGATT CCAATAGAAT TATCCAAGTT GTAATGAATC TTGTTTCCAA CTCACTTAAA TTCACACCAA TTGATGGGTC TGTTGAAGTT ACATTCAAAC TATTGGGTGA GTATGATAAA GAAAGATCTC AACAAGATGG ATACAAACAG GTTCATGTTT TAAAAGGCAC AAAGACTAGT CCAAATTCTT CAACTTCTAA CGAAGCAACA GGGATGGCAA AGTCTACCTC ATCTTCTACG CTAGCAATAA TGTCATCGTA CTACAAAACA AAGCCGATTC CAAAGATCGG AAAGCCAACA CCCGCACTCC CTGAAGAAAG ACTGAACGAT ATTGAATTGA GTCCGGTAAA ATCCAATTCA TCTGATTCCA CTGATCTCTC AAAGAATCTT GACTCCGATA GAGTTAGTTT ACTGACAATC TCTACAACAG AGTATGAGAA TAAGATTTTC GAATCTCAGT TTAACCACAT GAAAGCTTTA CCTAAGCTTC CTGTTAGTTC AAGTTCAAAT TCAATTACAG AATTCGAAGA TGACCAACCG AGACCGAATG CTCAACATCT AAAAGAAGAA CAGATTGGAT CAAATAAGAT GAAGCGTCCA GATTTAACAC CACAAAGCAG TGGCAGGCCA AAGCGAATTG AAAACAAGAG AGGAAATTCT TTTATTGCTA CTCCTATGGC CACGGCAGAA TTGATAAAAA ACAATAAAGC ATTTAGAATC AGAAATATGT ACAAACCAAA AACTTGGGTT GTCCAGATAG AGGTCAGAGA CACGGGTCCG GGTATTGAGC CAGCTTTGCA GGAGAAGGTT TTTGAACCAT TTGTTCAAGG TGACCAAACA TTGTCCAGAA GTTATGGTGG TACGGGGTTG GGATTATCCA TTTGTAGACA ATTGGCTACC ATGATGAAAG GAACCTTAAC TTTGAAGTCG GCAATTGGCG TTGGATCAAT ATTCACATTC ACAGTCCCAT TACCTCAAAC TGGTGAGATA CTAGTAGACG AAAGCGAAAT GGGCGAATTT TGTGAAGACG AATTCAATCC AAAAGCTAGA GTTAATAGAA AGGTTGCGTT TAAGAACTCA ACAATGGATG TTGATAATCC GACTCATCAT GAGTACGAAA ATGACGAACT TAGTGAGAAA GACGACTTCG TGGAAATGTC TCCATTGCGT CCACAGCCAC CTCCTTCAAG GGTAAGGACA GATTCGGTCC CCAGATCTGA TTCCTCTGGG GACAGTCCTC GACAAGAGAA TTCAGACTCT CCTGGAAGTT CTGGTAGCTT TCAATTACTA GGAAAAGTGG ACCCACCTCG GACCACATAT GAAAAACCAC ATCTTATAAC CAGGTCATCT ACAGGAACTG CAAATTCAGC GAACGCCAGT GACCGCCTGG ATCTACATCA CAACATACTT GATGATTTGT CAGATCTCAA AATCTTGGTT GCGGAAGATA ATCTGGTAAA CCAAGAAGTA ATCAAGAGAA TGCTCAAATT GGAAGGCTTC ACCAATATCA CATTGGCTTG TAATGGTGCT GAGGCAGTAG AGTTAACCAA AGAGTCGATT GAAAAGGATG AAATTTTTGA TTTGATATTT ATGGATGTGC AGATGCCCAA AATCGATGGT CTTTTGGCTA CGCGAATGAT AAGGACAAAT TTACGATTCG AGAACCCCAT CATTGCATTA ACTGCATTTG CAGATGAAAG TAACGTCAAG GAGTGTCTTA ATAGTGGAAT GAGTGGCTTC CTATCCAAAC CTATCAGAAG AACCAACTTA AGGAAGATTA TTGTTGAGTT CAGTCCTGTG TTATTAAGTG AGATAGTTAC AACACCACAA ACACATCAAA GCGACGAAAA GCGTCTTGGA TACCCACCAA CCAATCTTGG CAGCAGCGCT TAGAGAAAAA CACCGAAGAA AAGAGAACAA AATGAGCTCA CAAATGTAAC ATTTCAACTA TTGGCGAAGA GCTCCACCAA TAACATCGCC TCATTAGCAT TATAATTTTC ATTTCTTTCG TTGCCAATTT ACAATGTATA ATCATTTATA ATTTAGTAAT TCTACTTCAA ATTGAAGAAT GTGTAATAAA CATAGGAATA AGAAG
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Protein sequence | MRRLKIGIRP QLIILVGFAS LFSLLILAIV TAVYFSSNLS DLRAERLEVI SQLKTTQVRQ AVEYIYYQVY WLTTKDSIYA PLSSYRAGNI TTSIFSEAQN TLDQFLISSE LFAAARLYNL NLEIVAESYN NATSISQPAM DFLYPLAQNA TIPQSLLQQS SNNVEPYFTG PIGNSTDPNS AFYMGITLPI YSNSSIILDD PSLSGYLTVI ASAQSIQAAI NDTTGFSNNS SADYIVIALH GATTFNSDET GQVIGFQTVF PVKDNILSPN NVYNINDSSS VKEAFSRTYG SATNVRSITG KYVAIGFNQI LLDSTTRWAV IIEQARSKFL QPVNNLRKII IGVVIGIGVF MCLITFPLAV FFIRPITKLK EATEAITKSK KQFKQQKDRD SSAASPIPSS NPPPPYTTLN HRHKRNSVKS TSNTSTSGSL YSTAIRLPGR IPNSKKFFKD EFTELSEAFN IMTEELDKQY THLEDRVKLR TKELEASKIE AESANEAKTV FIANISHELR TPLNGILGMT SIAMDEEDQT RIQDSLKLIH RSGELLLHIL TELLTYSKNT LNRSKLEKSN FQILEVVYQV KSIFSKLAMD QRVNFKIWVR PNIFRKLILY GDSNRIIQVV MNLVSNSLKF TPIDGSVEVT FKLLGEYDKE RSQQDGYKQV HVLKGTKTSP NSSTSNEATG MAKSTSSSTL AIMSSYYKTK PIPKIGKPTP ALPEERSNDI ELSPVKSNSS DSTDLSKNLD SDRVSLSTIS TTEYENKIFE SQFNHMKALP KLPVTFRIRN MYKPKTWVVQ IEVRDTGPGI EPALQEKVFE PFVQGDQTLS RSYGGTGLGL SICRQLATMM KGTLTLKSAI GVGSIFTFTV PLPQTGEILV DESEMGEFCE DEFNPKARVN RKVAFKNSTM DVDNPTHHEY ENDELSEKDD FVEMSPLRPQ PPPSRVRTDS VPRSDSSGDS PRQENSDSPG SSGSFQLLGK VDPPRTTYEK PHLITRSSTG TANSANASDR SDLHHNILDD LSDLKILVAE DNSVNQEVIK RMLKLEGFTN ITLACNGAEA VELTKESIEK DEIFDLIFMD VQMPKIDGLL ATRMIRTNLR FENPIIALTA FADESNVKEC LNSGMSGFLS KPIRRTNLRK IIVEFSPVLL SEIVTTPQTH QSDEKRLGYP PTNLGSSA
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