Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_84718 |
Symbol | ADE13 |
ID | 4839942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | + |
Start bp | 1141080 |
End bp | 1142639 |
Gene Length | 1560 bp |
Protein Length | 483 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640391257 |
Product | 3-isopropylmalate dehydratase |
Protein accession | XP_001385573 |
Protein GI | 126138100 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0015] Adenylosuccinate lyase |
TIGRFAM ID | [TIGR00928] adenylosuccinate lyase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000783625 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0902341 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCTCCA ACTACGATAG TTACTCCACG CCATTATCTT CCAGATATGC TTCGGAAGAG ATGTCCAAGA TCTTCTCCTT GAGAAACAGA TTCTCTACCT GGAGAAAGTT GTGGTACAAC TTGGCCATTG CTGAAAAGGA AGTGGGCTTG ACTGTGATTT CGGACGAAGC CATTGCTCAG ATGAGACAGC ACTTGGACAT CACCGATGAG GAGATTGCTG CTGCTTCTAA GGAAGAAGCT ATTGTCAGAC ACGATGTCAT GGCTCATGTC CACGTTTTTG GTAACACCTG TCCTGAGGCT GCTGGTATCA TCCACTTGGG TGCCACCTCT TGTTTCGTTA CCGACAATGC CGATTTGATC TTCTTGAGAG ATGCCTACGA CGTCATCATC CCTAAGTTAG TCAATGTTAT CAACAGATTG TCCAAATTCG CCTTGGAATA CAAGGACTTG CCAGTTTTGG GCTGGACCCA TTTCCAACCT GCCCAATTGA CGACTGTGGG TAAGAGAGCC ACCTTATGGA TCCAGGAATT ATTATGGGAC TTAAGAAATA TGGAAAGAGC CAGAAATGAC ATTGGATTGA GAGGTGTTAA GGGTACCACT GGTACTCAGG CTTCATTCTT GTCGTTGTTC CACGGTGACC ATGACAAGGT TGAGGCATTG GACCAGAGAG TCGTAGAATT GTTGGGTTTT GACCACGTCT ACCCAGTCAC TGGCCAGACC TACTCAAGAA AGATTGACAT TGACGTTTTG TCTCCTTTGG CTTCTTTCGG TGCTTCTGCT CACAAGTTTG CTACCGATAT CAGATTGTTG GCTAACTTGA AGGAAATCGA AGAGCCATTT GAAAAGTCGC AGATTGGTTC TTCAGCCATG GCCTACAAAA GAAACCCTAT GAGATGTGAA AGAGTGTGTT CCTTGGCCAG ACACATGGGT GGTTTGTTGA ACGATGCTAT CCAGACTGCT TCTGTTCAAT GGTTCGAAAG AACCTTGGAC GATTCAGCCA TCAGAAGAAT ATCGCTTCCT TCTGCGTTCT TGACTGCTGA TATCTTGTTG AGTACAATGC TCAACATCAC CAGTGGCTTG GTGGTCTACC CAAAGGTCAT CGAAAGAAGA GTAAATTCGG AATTGCCATT CATGGCTACC GAAAACATCA TCATGGCCAT GGTGGAAAAG GGTGGTTCCA GACAAGACTG TCACGAAGAG ATCAGAGTGT TGTCTCACCA AGCTAGTGCT GTTGTCAAGC AAGAAGGTGG TGATAACGAC TTGATCGATA GAGTCAAGAA GACCGAATAC TTCAAACCTA TCTGGGCCGA CTTGGAATCG TTGTTGGATC CAAAGACTTT CGTCGGTAGG GCCCCTGAAC AGACGGAAAA GTTCGTCAAG GTCGATGTTG CCAAGGCAAT CAAGCCATAC GAAAAGTACA TCACCAACGA AGCTGTTTCG TTGAGTGTTT AGTTTGTTCT GGTGAATACT AATATGTTTT AATCACATTA TTTTCAATTC TATCTCTCTA TCTTGTCTAT TGTATAAAGA TTAGCTACAA AAATTTAAAC GTGTTTGTTT
|
Protein sequence | MSSNYDSYST PLSSRYASEE MSKIFSLRNR FSTWRKLWYN LAIAEKEVGL TVISDEAIAQ MRQHLDITDE EIAAASKEEA IVRHDVMAHV HVFGNTCPEA AGIIHLGATS CFVTDNADLI FLRDAYDVII PKLVNVINRL SKFALEYKDL PVLGWTHFQP AQLTTVGKRA TLWIQELLWD LRNMERARND IGLRGVKGTT GTQASFLSLF HGDHDKVEAL DQRVVELLGF DHVYPVTGQT YSRKIDIDVL SPLASFGASA HKFATDIRLL ANLKEIEEPF EKSQIGSSAM AYKRNPMRCE RVCSLARHMG GLLNDAIQTA SVQWFERTLD DSAIRRISLP SAFLTADILL STMLNITSGL VVYPKVIERR VNSELPFMAT ENIIMAMVEK GGSRQDCHEE IRVLSHQASA VVKQEGGDND LIDRVKKTEY FKPIWADLES LLDPKTFVGR APEQTEKFVK VDVAKAIKPY EKYITNEAVS LSV
|
| |