| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84338 |
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| Symbol | DEG1 |
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| ID | 4840127 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 321058 |
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| End bp | 322639 |
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| Gene Length | 1582 bp |
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| Protein Length | 465 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640391442 |
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| Product | pseudouridine synthase |
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| Protein accession | XP_001385404 |
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| Protein GI | 150865972 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.188482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.052244 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTTTTACGAT GAGCATCAAT ACCAATTTCA ACTTTTCACT TCCAGCGAGC CTATTACTGG
GATCCAGCAG TAGTATCAAA TACCAGGTGT ATGCTAAGGT ATAGACCGAC GTGGGCGATG
CTCAAAAGGA CATTTAGCAG CATGACCAAA ACAGAAGCAA GGGTCGATTA TGAAAACTGG
ACTAAAGAAC AGCTTATAGA AAGAATCCAA CAGTTGGAAA ATTCATCCTC GAAATTAAAC
TCAACACTTC CAGTTGCTAG TCCAGTTGTA AACGATGCAG TTGCTTCCGC AAAAGACATA
AGTAGATCAG AGTCTGCTCC TCCAATCATG GACATGGCCA CAGAAGGGTC AAAGAAAAAG
AAAAAGGTTC GAACTTTCGA TATGAACAAA TACAACAAGA GATTTATAGC ATTGAAATTT
GCCTATTTAG GTTGGAACTA CAACGGATTG GCCTACCAGC TGGAGCCAAC ACCATTGCCT
ACTGTTGAAG AAGTCGTTTT GAAAGCTTTG ACGATGTCAA GACTTATTAC TGAACCTACT
CCAGACAAGT GCAAGTTCAG TCGTTGTGGC CGTACTGATA AAGGTGTCAG TGCCATGAAC
CAAGTCATCT CGTTAGTCGT GAGATCCAAC TTAAATGAAG AAGAGCAATT GCTCAAAGAA
AACGACCACA AAGAAATCAA GTACTTGTCC ATCATTAATG CTTTGTTACC TCCAGATATA
AGAATGACAG CTGTCTGTTT AAGACCTCCT CCTAAATTCG ATGCTAGATT CAGTTGCGAC
TATAGACACT ACAGATACTT GTTCAAGAAA CACGATCTTG ATATTGAGCT TATGAATGAG
GCTTGCATAA AATACATCGG ATCCCATGAC TTCCGTAACT TTTGTAAGAT TGACGGATCC
AAACAGATCA CAAACTACGT CAGAGAAGTC TACAGCATGA AAATCATCCA CCTAAAAGAT
GATTTTTATG CTGTTGACTT GAAGGGTTCT GCCTTCCTTT GGCATCAGGT CCGTTGTATG
GTGGCTATAT TGTTCTTGAT TGGTCAGAAG CTTGAAGCTA CCACCATAAT CGAAGACTTG
TTTGACTTGG AAAAATATCC TACTAAGCCA GTCTACGAAA TGGCCAATGA TATTCCCTTG
GTTCTCTACG ATTGTATATA TCCGGAAATG GAATGGCTCT CGCCAATCGG GTCTGAAGGT
ACCATCGAGA AGTTCTACAA ACACTTCGCC ATGTTCAGGG GCCAAGTATT GGACTACCAA
GTTAAGGCTA ACATGATTGG AATTATGGAA CCATTGGTAA TGAAAGATGC TCCTGAAATT
GAGAACACCC AGAAACGTGG AACCATGAAT GTTGGTGATG GTAGTGGTCG TAACTATTCC
AAGTACGTTC CAATCAGCAA GCGTGAAGTA GGCGAAACCG TTGAGGCAAT CAACTCAAGA
CACAAGGAAA AGAAGAGAAA AAGAGCCATT GCACTCAGTG AAGCTAACAG CAGGGCAGAC
AGCGAAGTCA GTAGCATTTT AGAAGAACAA TAGTCCTGTA AATATTGTAT CATAGACTTT
AGAATAGATG GAATCTAACT GG
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| Protein sequence | MLRYRPTWAM LKRTFSSMTK TEARVDYENW TKEQLIERIQ QLENSSSKLN STLPVASPVV
NDAVASAKDI RSKKKKKVRT FDMNKYNKRF IALKFAYLGW NYNGLAYQSE PTPLPTVEEV
VLKALTMSRL ITEPTPDKCK FSRCGRTDKG VSAMNQVISL VVRSNLNEEE QLLKENDHKE
IKYLSIINAL LPPDIRMTAV CLRPPPKFDA RFSCDYRHYR YLFKKHDLDI ELMNEACIKY
IGSHDFRNFC KIDGSKQITN YVREVYSMKI IHLKDDFYAV DLKGSAFLWH QVRCMVAILF
LIGQKLEATT IIEDLFDLEK YPTKPVYEMA NDIPLVLYDC IYPEMEWLSP IGSEGTIEKF
YKHFAMFRGQ VLDYQVKANM IGIMEPLVMK DAPEIENTQK RGTMNVGDGS GRNYSKYVPI
SKREVGETVE AINSRHKEKK RKRAIALSEA NSRADSEVSS ILEEQ
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