Gene PICST_83982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_83982 
Symbol 
ID4839139 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp374260 
End bp375349 
Gene Length1090 bp 
Protein Length131 aa 
Translation table12 
GC content37% 
IMG OID640390454 
Productpredicted protein 
Protein accessionXP_001384731 
Protein GI126136415 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1717] Ribosomal protein L32E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.958141 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.216433 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ACCAACATCA AAAAGTATGT TAGATCCATA TCCAAGTACA GGGGAAGTGA TATAGAGACC 
AGCTGGACAA CCAGCTTGTA GAAAGAAATA GAAGTCCGGC GAAGGAACGA AATCCAATGA
GTCCATCACA ATTCACATCA TCGAGAAAGA TCGAAGTAAT GAGATAGAAT CAGATTGAAA
TATTCAAGTA CCAAAGCCGT CAAGATATCA ATAGGAAGTA ATAGAGTTTT AATGTCGTGC
CAGACTTTCA ATTAGTCGAA GTTAGATCAG ACGAAGAGAG TTCAAGATAG TCAGTTTCTA
ATGAACTAGT GAACAATAAT CGAGATGAAA TCAACTGCTA TGATCAGTGA TGAGACATCA
GACCAATGTT TCTTCGACAA GAGGTTGCCA ACTTCATGTT CTCATTCAAG TCATAATTTT
TGAATTAAAT GTTCATTTCA TATTTTCAAA TTTTCCAATT CATCACTTCG TAAAGAATTT
TCATTCAGCA TGTACACCAA CGTATATGAG GTCTTCTATA TTCTAATCTG TACTCACAAT
CAAGTTAACA AAATACTAAC ATCATCTAGT GGCTGCTTCA TTACCTCACC CAAAGATTGT
TAAGAAATAC AGCAAGACTT TCAAGAGACA CCACTCTGAC AGATACGCCA GAGTTTCTGA
AAACTGGAGA AAGCAAAAGG GTATCGACTC TTGTGTCAGA AGAAGATTCA GAGGTACTAT
CCCACAACCA AACATTGGTT ACGGTTCCAA CAAGAGAACC AAGCACTTGA CTCCATCTGG
CCACAAGGTC TTCCTCGTCA AGAACGTTAA GGACTTGGAC GTTTTGTTAT TGCACACCAA
GACCTACGCT GCTGAAATCG CCCACAACAT CTCCGCTAAG AACAGAGTCG AAATTGTCGC
CAAGGCCAAG AAGATTGGTG TCAAGGTTAC CAACCCTAAG GGTAGAGTTG CTTTGGAAGC
TTAAATTAGT TAAACTGGTT AATCATTATA TTCATTTATT GTCATCTAAC ATGTTTTAAT
TAATTATGTG TTCTGGGTTC CTCTTCTTTT TTAATATATA AAAAGTTGTA AAATACATAG
TCTTCAGAAG
 
Protein sequence
MAASLPHPKI VKKYSKTFKR HHSDRYARVS ENWRKQKGID SCVRRRFRGT IPQPNIGYGS 
NKRTKHLTPS GHKVFLVKNV KDLDVLLLHT KTYAAEIAHN ISAKNRVEIV AKAKKIGVKV
TNPKGRVALE A