Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_80454 |
Symbol | ITR2 |
ID | 4851257 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 1328326 |
End bp | 1330186 |
Gene Length | 1861 bp |
Protein Length | 522 aa |
Translation table | |
GC content | 43% |
IMG OID | 640392965 |
Product | myo-inositol transporter |
Protein accession | XP_001387902 |
Protein GI | 126274243 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.806803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.231524 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAATC CTAAATTAAA AAACAACTCC AGTTCCCAGT TGTTGAACTC AGAGGTTAAC CTCTCCACCT CTTCAGTCTC GTCCAGCTCC TCTGCCAACG CGTTGTTGAA TACAAACAAA GTCAGACAAT ATGAATCTTA TTCAAACGGT TCTCCTGCTA TAAACAAAAC TAATACAAGT GATTTAGACC TCGATCTCCA GTCTTATGGC GGTTCTGAAT CTGAGTCTAG ACCTTCCAGA CTCGTCATCA TCTTGACGCT TGCCTCTTCT ATATCTGGTT TCATGTTTGG TTACGATACC GGTTATATCT CTTCGGCGTT AGTGCAAATA GGTACTGATT TGAGTGACAA AATTCTTACC AACGGTGAAA AAGAGTTCAT CACTTCAGCA ACATCGTTGG GTGCTTTGAT TGGTGCTGTT ATATCGGGTA TCTTGGTCAA CTTGATTGGT CGTAAGACGG TATTGTTAGG TTCTAATGTT GTATTTGTAA TAGGTACTAT CATCCAGTTG GCTTCGAAAA CGGTATGGAC TATGATCGCA GGAAGATTCG TGTTGGGTCT TGGCGTTGGT ATTGCCTCTT TGATCGCTCC CTTAATGTTG AGTGAATTGG CTCCGGCCAA GTACAGAGGT AGATTAATTG TCACTAACGT CATGTTCATC ACAGGTGGTC AACTTGTAGC ATACTTCATC AACTGGGGCC TCACACGGGT CAGCCATGGC TGGAGAATTT CTGTTGGCTT GTGCATGGTG CCTCCTGTAG TTCAGTTCGT ATTGTTTTGG TTCTTGCCTG ATACTCCTAG ATACTATGTT ATCAAAGGTG ACATAGAAAC AGCTAAAGAA GTCGTCAGAA GAACCCATAA TCATCCCTCA GAAGAATTTG TCAACGCTAC TATTGAAGAA ATGATCGCTT CAAACTCAAC CGTGTCTGGT TCTAGCCAGT TGAGACGTGT ATGGAACTCC ATCAAATTGA TCCATACCAA CCCTGCTAAT TTCAGAGCCT TGATCTTAGC CACTGGCTTG CAGGGTATTC AGCAGTTCAC TGGTTTCAAC TCATTGATGT ACTTCTCTGC TACCATTTTC GAAACCATCG GCTTCAAGAA TGCAACTGCT GTGTCTATCA TCGTTGCTGC CACCAACTTC GTTTTCACCG CTATTGCCTT GTGTATTGTC GATAAGGTAG GTAGAAGAAG AATCTTGCTT TGGGCGATTC CCTGTATGGC TGGCTCCTTG GTAATCTGTG CTATTGCTTT CCACTTCTTG GGTGTAGTTT TCACTTCGGG CTCCAACGTC GAAGTCCGTA GTTCAGGAAT TTCCGGTTGG GGTATTGTAG TCATTATTGG CATGGTCTTG TATGTCGCTT CCTACGCCAT TGGTATTGGA AACAGTGCCT GGATCGGTGT GGAATTGTTC TCTGATGTGA ACGTCAGATC TGTCGGAGCC ATGTATGCTG CTGCTACTAA CTGGGCTGGG TCATTGGTCA TTGCCTCTAC TTTCTTGACT ATGTTGGAAA ACATTACCCC AACTGGTACC TTCTCATTCT TTGCTGGCTT GTGTGCTGTT TCGTTCTTGT TTGTCTATTT ATTGTTGCCC GAAGTTGCCG GATTGGAATT GGAAGAGACA ACTGCCTTCT TAGCCGACGG ATTCAATGTC AAACAAGCTT CCAAGTTGTC CAAAGAAAGA AAGAAGCACT CAAAATTCAT CAACCAGCAT TCTGCTTAAG AAAGCGGACC CATCAAAAAC AAAAGGTTGC ATCCACTTTT CAATTCTTGT ATGATTGAAT CTCAAGGAGA ATTCGGTTTC GGTTTTGCTT GTATGTATCC AATCTTTAAT ATTTATATGC CTTTATTTAC ATTTAATCGT T
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Protein sequence | MSNPKLKNNS SSQLLNSEVN LSTSSSRPSR LVIILTLASS ISGFMFGYDT GYISSALVQI GTDLSDKILT NGEKEFITSA TSLGALIGAV ISGILVNLIG RKTVLLGSNV VFVIGTIIQL ASKTVWTMIA GRFVLGLGVG IASLIAPLML SELAPAKYRG RLIVTNVMFI TGGQLVAYFI NWGLTRVSHG WRISVGLCMV PPVVQFVLFW FLPDTPRYYV IKGDIETAKE VVRRTHNHPS EEFVNATIEE MIASNSTVSG SSQLRRVWNS IKLIHTNPAN FRALILATGL QGIQQFTGFN SLMYFSATIF ETIGFKNATA VSIIVAATNF VFTAIALCIV DKVGRRRILL WAIPCMAGSL VICAIAFHFL GVVFTSGSNV EVRSSGISGW GIVVIIGMVL YVASYAIGIG NSAWIGVELF SDVNVRSVGA MYAAATNWAG SLVIASTFLT MLENITPTGT FSFFAGLCAV SFLFVYLLLP EVAGLELEET TAFLADGFNV KQASKLSKER KKHSKFINQH SA
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