Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_79777 |
Symbol | |
ID | 4841132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009048 |
Strand | + |
Start bp | 875415 |
End bp | 877565 |
Gene Length | 2151 bp |
Protein Length | 598 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640392447 |
Product | predicted protein |
Protein accession | XP_001386584 |
Protein GI | 150866854 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0814] Amino acid permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.405101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTCATGCATC TGTAGATTTT GAACACTTTT GTTTTTCGTT TAACGATCTT TAGCATTTAC TCCAGGACCA AAAGACCGCT TTCTACTTCT GGGAAGGGCC GTTAGCTTTG TGTAGGCTGA ACTTTTCTTG TTTCTCATTG ATTTTGGCAA TTTACAACTA GACTACTCTA TCTTGTTCCC CATTTTTCAC AGTTTATCTG CCCATTTTTC ACATCTCATC CCCCAGTATT ATGTCTGGTT CCGACGACGA AAACGCGGTC GATGAGTACA CCTCGTTGAT AGCCTCTAGA CGGCCCTCGA TCATGTTTCT CGATACGCCT CTTGGCTCAT TCAAAGGCCC TAACTCTCTC CACAATTTTG CTTCGTCCTT CACCAGAGCC CAGTCGTTTG CTGTGTCTAA AATCGACAAT GATATCCACA GAGCGAGATC GTTTTTTGTC GAGAATATTG ACACTGACGC TGATGACGAG TTGTTTGATC CGGAATTAAT GATTCCATCA CAAAAAGGTG AACGTCTTTC CGTAGTAATC CACGACATCT CGTCTAGAAA CCAGCTTTTC ATGAATAATG TCAACGAGTT GGACCAGAAC ATCTCGCCCA ACAACGACGT CTTCTACCAC GATGACATCT TGTCCGCCTT GAACGAGTCC AGGTCGAGGC ACAACTCGAC CTACAATACA CCAGGTGCCA TCCCCATTTC GAAAAAGCGT GTATTACCTT CTCCCTCGTT CTCTTCTATC CGTTCTGCGC TCTCATTGGC CACAACATCA GACCATATCA ACTTGAAGAA AATAGAGGAC AAAGATGGAA ACGTCGTCAC GGTATTGGCC GGTCAATCAA CAGCACCCCA GACCATCTTC AATTCGATTA ACGTTCTCAT TGGAGTGGGC CTCTTGGCTC TTCCTGTAGG TATCTTAAAA GCAGGTTGGT ACTTCGGAAT TCCCATCTTG GTCATCTGTG GCTTGGCAAC TTTCTGGACT GCTGGATTAT TGTCTAAATG TATGGACACT GATCCCACGA TTATGACATA TGCTGATTTG GGTTATGCTG CCTATGGTTC CACAGCCAAG TTGTTAATCT CGTTGTTGTT CTCTATCGAT CTCTTGGGAG CCGGAGTTGC GCTTATAGTC TTGTTCAGCG ATTCCTTGTA CGCTCTTTTA GGCGACGAAG AGGTGTGGAC AAGAACGCGG TTCAAGTTCC TCAGTTTTGT CGTCTTGACT CCATTCACAT TCGTCCCTTT ACCAGTATTG TCAATCTTCT CGTTGTTTGG CATTCTCTCG ACAATTTCCA TCACTATTCT CGTAGCATTT TGTGGTATCT TGAAAACCGA TTCTCCAGGC TCGTTGTTAG CGGTAATGCC CACCAACATC TGGCCGCAAT CGTTACCTGA TCTTCTTTTG GCCATTGGAA TCTTAATGGC TCCCTTTGGT GGTCACGCCA TCTTCCCTAA CTTGAAAACT GATATGAGAC ACCCATACAA GTTTGAAAAG ACTTTAAGGT ACACCTACAG CATTACCATG ATCACAGATA TGGCAATGGG TGTTTTGGGC TTCTTGATGT TTGGCCACAA ATGTAGCAAC GAAATAACAA ACACCTTGTT GTTAACTCTG GGATACCCCG CATGGTGCTA TCCTTTGATC AGTGGGTTGA TCTGTTTGAT TCCCTTGGCC AAAACTCCGT TGAATGCCAA ACCAATTATC TCTACCTTGG ACGTCTTGTT CAACGTGCAA GTTCCCAGCG AGCATTTATC GTTGAACTTG CTTAAGGATG TCGGTAAGTT TTTCATCAGA GTCGGAGTCA ATGCCGTCTT CGTACTCTTG GCCATTTTGT TCCCTGAATT CGACAAGATC ATTGGCATTC TTGGAGCTTC CATCTGCTTC GTTATCTGCA TCGTCTTGCC ATGCTTGTTC TATTTGAAGT TGTGTTCATC CAAGATGGGA GCTTTGGAAA GAGTACTCAT TCAATTTGTT GTATTTTTCA CCTCCATCTT GGCCGTTGTC GCCACTTGGG CTGTCGTTCA GTTCTAGGCT GGCTAATCTT TTTGCATCTT TATCTACTTA GTTAATTTAC AGTATAGACC ATGGGATCCG GGAAGCCAGG TCTTTAAACA ATTAGAGTCT ATAGAATAAT ATCAAAACTC GTGCTCTCTA C
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Protein sequence | MSGSDDENAV DEYTSLIASR RPSIMFLDTP LGSFKGPNSL HNFASSFTRA QSFAVSKIDN DIHRARSFFV ENIDTDADDE LFDPELMIPS QKGERLSVVI HDISSRNQLF MNNVNELDQN ISPNNDVFYH DDILSALNES RSRHNSTYNT PGAIPISKKR VLPSPSFSSI RSALSLATTS DHINLKKIED KDGNVVTVLA GQSTAPQTIF NSINVLIGVG LLALPVGILK AGWYFGIPIL VICGLATFWT AGLLSKCMDT DPTIMTYADL GYAAYGSTAK LLISLLFSID LLGAGVALIV LFSDSLYALL GDEEVWTRTR FKFLSFVVLT PFTFVPLPVL SIFSLFGILS TISITILVAF CGILKTDSPG SLLAVMPTNI WPQSLPDLLL AIGILMAPFG GHAIFPNLKT DMRHPYKFEK TLRYTYSITM ITDMAMGVLG FLMFGHKCSN EITNTLLLTS GYPAWCYPLI SGLICLIPLA KTPLNAKPII STLDVLFNVQ VPSEHLSLNL LKDVGKFFIR VGVNAVFVLL AILFPEFDKI IGILGASICF VICIVLPCLF YLKLCSSKMG ALERVLIQFV VFFTSILAVV ATWAVVQF
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