| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_68661 |
|---|
| Symbol | RRP6 |
|---|
| ID | 4851204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1188690 |
|---|
| End bp | 1191113 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | |
|---|
| GC content | 43% |
|---|
| IMG OID | 640392912 |
|---|
| Product | ribosomal RNA processing 3'-5' exonuclease |
|---|
| Protein accession | XP_001387875 |
|---|
| Protein GI | 126274190 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0460468 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CTTATCATGT CACAACCCAA GGATATCCAT GAGGCTGTCT TGCCGAAAGT GATGCAGACT
GTTCGTGCTG CTTCGGCTCT AGCTGCTCAG GATGTGAACT TCTACAAATC AGTGGATGCT
GATTTGGCAC AGAAGATTGA TACATCTGCC AGAGGTGTCT TGGACATAGC GAACAAATTG
ATACGGAATG TGGGTCCCAC TGAAGAAACC AGTAGTAGCA TCAGATTTGG AATTGACAAC
ATTTCTAGTG AATCGGACTG GAAGCCTATT GCCAATGTGC TTGATAGCAT TTTTGAGAAT
ATCGACAGTG CATTTGACCA GGCTATCAGG GCCAAGAATG GAAGGAAAGA TGATAACAGC
AACAGTAAGA ACTTGCAGTA CTTGGAAGAT GGCAACGATG TCAATCTGAA GCATTCTGGG
AAGAGGATAA CGAAGCCTCA ACTCAGTTTC AGAGTACCAG TAGACAACTC AGAATCTCAT
CCTTTCAAGC CCAAACTCAC TTGTAAACCC AATGGCTTAA AAAGCTTTGA GGAAAGTGTA
GAATTGAAGA GTCCAGAGCC CAATTATGAG AATTCTATCG AGATTGTCGA CCCTGCATTC
TATCCACAAC CATATGAATA TGAGATTGAC ACACAGCCCT ATCCTGCTTC GATTCTTGAG
AAATCAGAAC CAATAGCTCC ACAAGACTGG ACTTCAACCA CAGCCACTTG GGTAGACACT
GTGGAAGAGT TGCAGAAGAT GGTAGAGGAG TTGAAAAAAC TGTCAGAAAT TGCAGTAGAT
TTGGAACATC ACGATTACCG TTCTTACTAC GGAATTGTAT GTTTGATGCA GATATCTAAT
AGAGACCAAG ACTGGATAAT TGATACGTTG GCTCTCCGTG ACGATTTGGA GTGTCTCAAC
ACAGTTTTCA CCAATCCTCA CATTGTCAAA GTCTTTCACG GTGCGTTTAT GGACATCATC
TGGTTGCAGA GAGATCTTGG CTTGTACATA GTTTCTTTGT TTGACACCTA CCATGCCTCA
AAGCTGTTGG GATTTCCTAA GTTTTCATTG GCCTATTTGT TAGAGACATT TGCCCACTTC
AAGACATCCA AGAAGTACCA GTTAGCCGAC TGGCGAATCA GGCCGCTTCT GCCTCCCATG
ATGGCCTACG CAAGATCTGA TACTCATTTC TTGTTGAGCA TTTTCGACCA GTTGAAGAAT
AAACTTATAG ATGCTGGAAA CGAGAAGCTT CAAAGAGTAT TGTTTGATTC GCGTCAAGTA
GCCAAAAGAC GTTTCGAATA CACTCCATTC AGACCTTTGA CCAATAATAT CAACAGCAGG
GTTTCCTGTC CTGTAATGGC CAGTAATCCC CGGGAGCCTT TCTCATCTAT CATGGTGCAA
TACAATGTGC CTTCTCATAA AAAATCAGTA GTTGAAGCTT TGTACAATTG GCGAGACCGT
ATTGCAAAGA TCGAAGACGA ATCTGTCCGT TTCGTGATGC CAAACCAGCT CTTGGTCAAC
TTGGCCAACT TGAATCAACC TGTGGATGTT GCGAAAGTAT TGGGGGCTTC TCATTTTGTG
TCCGAGCATG TGAGATTAAA CGCCAAAGAA GTAGCAGAGT TGCTTGAAAA CACATTGAAG
TTGGCTTCCG ACAACGACTG GGACTTGGTA GACAAATGGA ACGATGCCCA GAATGGAAGG
AGTGTAGCAG AGGTAGACTA TTCGAATATT GATGAAGATG TTGCAGAACA AACAGGCGAA
AGCTTTGACC TTCTTTGTCA AAGCTTGGAT GTTTTATTAG GCAATTCTAC CAGCACATCG
TTAGTTTCTA AACTGACTCG TTTGTTCTCT AATATCTACG ATAATTCTGC ACAGCAAACG
CTCGAAATCG ATCCAGAGAA GTCTGTAGTC GTTAAACACG ACTTTGGCAG CGAATACAAT
TCAAGACTTG TAGAGGTTTG GAATGGTCTT CAAGAGCTCG AGAGATCACA GTCTATGACT
GTCTCCACTG AGGTTGCTGA AGAAGCAGAC GAAGAACAAG AAATAGCTGA GGAATCTCAA
CCAGCAGTAG AAATCCAGCC CATTCAACCA GTTATTCTGT TCAAAGAAGA TAAACTCGAT
CCAAATGAAA TTGTCACTAT TCGTAAGAAG AAGCATGGGG TTCAACAAAA GAAGAATCCT
CAAACTACAT TGAAACAGTT AGAAGGCCCA GTATTGGACT TTGCTACATC CAATAAAGTC
ATGCTTGACA CTGGCAAGGA CAGGTATAAT AAGAAGAAGG AAAACCAGAA GAAACGTTCA
TTTGACCCAT ACTCCAAGGA GAGCGAGGGT CCTAAGCCAG CCAAAAAGAC GAGAAAGTTG
AACGAGGGTA AGTCGTCTAC TTTCAGAAAT ACGAGAAGGG GATAGATAGA ATAGTGTATA
ATAGAACAAT AGTAGCGATA GATT
|
|---|
| Protein sequence | MSQPKDIHEA VLPKVMQTVR AASALAAQDV NFYKSVDADL AQKIDTSARG VLDIANKLIR
NVGPTEETSS SIRFGIDNIS SESDWKPIAN VLDSIFENID SAFDQAIRAK NGRKDDNSNS
KNLQYLEDGN DVNLKHSGKR ITKPQLSFRV PVDNSESHPF KPKLTCKPNG LKSFEESVEL
KSPEPNYENS IEIVDPAFYP QPYEYEIDTQ PYPASILEKS EPIAPQDWTS TTATWVDTVE
ELQKMVEELK KLSEIAVDLE HHDYRSYYGI VCLMQISNRD QDWIIDTLAL RDDLECLNTV
FTNPHIVKVF HGAFMDIIWL QRDLGLYIVS LFDTYHASKL LGFPKFSLAY LLETFAHFKT
SKKYQLADWR IRPLLPPMMA YARSDTHFLL SIFDQLKNKL IDAGNEKLQR VLFDSRQVAK
RRFEYTPFRP LTNNINSRVS CPVMASNPRE PFSSIMVQYN VPSHKKSVVE ALYNWRDRIA
KIEDESVRFV MPNQLLVNLA NLNQPVDVAK VLGASHFVSE HVRLNAKEVA ELLENTLKLA
SDNDWDLVDK WNDAQNGRSV AEVDYSNIDE DVAEQTGESF DLLCQSLDVL LGNSTSTSLV
SKLTRLFSNI YDNSAQQTLE IDPEKSVVVK HDFGSEYNSR LVEVWNGLQE LERSQSMTVS
TEVAEEADEE QEIAEESQPA VEIQPIQPVI LFKEDKLDPN EIVTIRKKKH GVQQKKNPQT
TLKQLEGPVL DFATSNKVML DTGKDRYNKK KENQKKRSFD PYSKESEGPK PAKKTRKLNE
GKSSTFRNTR RG
|
|---|
| |