Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_66451 |
Symbol | MDH1 |
ID | 4851338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 1539726 |
End bp | 1540989 |
Gene Length | 1264 bp |
Protein Length | 332 aa |
Translation table | |
GC content | 48% |
IMG OID | 640393046 |
Product | mitochondrial malate dehydrogenase |
Protein accession | XP_001387939 |
Protein GI | 126274379 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.390905 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATTCTCCACT ACTCCAGCAA TGCTCTCTAA AATCGCTACC AGATCATTCT CTTCTACTGC TGCCAACGCA CACAAGGTCG CCGTCTTGGG TGCCGGTGGT GGTATCGGTC AACCTCTTTC CCTCTTGTTG AAGTTGAACC ACAAGGTCAC CGACTTGGCC TTGTACGACT TGAGAGGTGC TCCAGGTGTG GCTGCTGACG TTTCACACGT GCCAACCAAC TCTACCGTCA AGGGCTACAA CCCAGACCAA TTGGCCGAAG CCTTGACCGG TGCTGACGTC ATTGTCATCC CAGCCGGTGT CCCAAGAAAG CCAGGTATGA CTAGAGACGA CTTGTTCAAC ACCAACGCCT CCATTGTCAG AGACTTGGCC AAGGCTGCTG CTGAGAACGC TCCTAACGCT GCTGTTCTTG TTATCTCCAA CCCAGTCAAC TCCACTGTCC CAATTGTGGC TGAAGTATTC AAGTCCAAGG GCGTTTACAA CCCAAAGAAG CTTTTCGGTG TAACCACTTT GGACGTGTTG AGAGCCTCTA GATTTGTTTC CGAAATTGCC GGAACCAACC CTGTCAACGA AAAGGTCACC GTTGTCGGTG GTCACTCCGG TATCACCATT GTGCCACTTT TGTCTCAAAC CAACCACAAG GACTTGGACA CTGAAACTAG AGATGCATTG ATCCACAGAA TCCAATTCGG TGGTGACGAA GTCGTCCAAG CCAAGGATGG TGCTGGTTCT GCCACTTTGT CTATGGCCCA GGCTGGTGCT AGATTTGCCG GTGCTGTTCT TGACGGTTTG TCCGGCGAAA AGGATGTCAT TGAGCCATCT TTCGTCGACT CCCCATTGTT CAAGAGTGAA GGTGTTGAAT TCTTCTCTTC CAAGGTCACC TTGGGCGTTG AAGGTGTCAA GACCGTCCAC CCATTGGGCG AATTGTCCAA CCACGAAGAA GAATTGGTCA AGACCGCTAA GGAGACCTTG ATCCTGAACA TCAAGAAGGG TGTTGAATTC GTCAAGCAGA ACCCATAAGT AGAGTGCTGA TGTATATACG TTATGTCTCA TCTATGAATG AATGAGTATG AAAAAGCGAT TGTAGAGTAG TTTGTCAAGC AGTATTGATC AAATTAGATT GTTAATTTTA ACTCAATTGA GTCTATTCTG CTCGATTTAA TACAATACTT TCAAGCAAGT ACAAGCCATA GTCCAGAGAA GTTGAGATCA AATTGATCTC ATAGATCACA CTTCTAGCCG AGGAAGAAGG AGAGAAAACT GTCT
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Protein sequence | MLSKIATRSF SSTAANAHKV AVLGAGGGIG QPLSLLLKLN HKVTDLALYD LRGAPGVAAD VSHVPTNSTV KGYNPDQLAE ALTGADVIVI PAGVPRKPGM TRDDLFNTNA SIVRDLAKAA AENAPNAAVL VISNPVNSTV PIVAEVFKSK GVYNPKKLFG VTTLDVLRAS RFVSEIAGTN PVNEKVTVVG GHSGITIVPL LSQTNHKDLD TETRDALIHR IQFGGDEVVQ AKDGAGSATL SMAQAGARFA GAVLDGLSGE KDVIEPSFVD SPLFKSEGVE FFSSKVTLGV EGVKTVHPLG ELSNHEEELV KTAKETLILN IKKGVEFVKQ NP
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