| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_62265 |
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| Symbol | SWR1 |
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| ID | 4840164 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 1571981 |
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| End bp | 1576720 |
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| Gene Length | 4740 bp |
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| Protein Length | 1557 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640391479 |
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| Product | snf family helicase |
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| Protein accession | XP_001385659 |
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| Protein GI | 150866161 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.510209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TCTAAATCAG AAAAACTAGC TCGTATCATA ACCAATTTCA ATCTCTCAGT AAATGAACTT
TTCCACCTCA GAGAATATCA GTCGATAGTC TCGTGGAATC CCTCCGATTT TTCCACTGCT
ATACCCGGCC ATCAAATTCC GGAGTTGTTT GAGATATTCA CACAAGACGC AGCCAACCAG
ATTGAGTGGG ACGCTAATGT TGAAGATTTG AGCTCCATAC CTTTACGACT TCAAAAGAAA
GTACTAGCCG AACGAGAAAA GAAGTTGTTA CTTAAGTATC CGTTCAAGAA CGATGTCATA
GATATGAGCA AACAGCTAGA ACGAGAAATC ATAAGTCGTG CATTGGAAGA GCCAGAAGGA
GAAACTCATA CTACGACTAA GAGTAATGGC TCAGTACCCA AGCCTCAAAA ACAAGCCAAT
GGCCATTCGA AAACGTTGAA GAGCAAGAAA AAGGTTAAAC AGAAAAGAAT TGACGAACAG
GAAGTAGATG TAGAAATTGA AGACGAAGAA GAGGATCCCG ATGACGAAAT AAATACAAAT
TACAGGTTAA AAGCTGTCAA ATACACCATA GCTCCACCGT TAGTAACGCA TCCGTCACAT
ATTCCAGCGT GGAGACCCGA GATTAGTAAT GCTGATGGAA TCCAGGATGG CTCTGAAGAA
CACCAGATCC TCGAATTCAA CCCTGAGCCC ATCACCGTGG TAAAGAACCG TGATGGAAAC
ATAGTAGCAC CAAATATAAC TTCGAAATTG CACAACTACT TGGAGTCCAA CTACAAGGTA
GCCATAGTGG ATGACAGTAA TGTCGACTAC AACAACACAG CGGAAGAGTT TGAGGTTGTG
ACTGCACAAC AGGAAAACAT GTTGAAAGAG ATATACCACA AGTGTACAAT AGACAACAGT
TTGGAGTTGA ATGGTGATAA AATAGAACGT AGAAAGATCG TTTTACCTCA GGCTTCGAAC
TTAAGACAGA CATCAGATCC CTTCCGTAAC ACTGCAACTG TAACACCTAA AGTGCAAGGT
TCAACAAACA ATCTCACTCA TCACGATTAC TTGCTAAATC AGGGTATATC CTTCGCCAAA
TTGCACCAGC AAATGCGTAA ACAGCATCTG CTGCGTACGA AGAGGATTGC CCAGATGGTG
GATCAATACT TCAAAAGAAA GAATGGTGAA AAGGACAGAC TTGCGCGAGA ACGAGAGCTC
AACCTAAAGA AATTGAGTAG ATTAGCTGCT CAGGCTGTTA AGAAGCGTTG GACTCAAGCA
AACAAGGTGT ACTCCATTAT TCAGCAGCAA AAAGAAGACG AGTTAAAACA AATACAAGGT
AGAGAGCACT TAAGTCAGAT GCTAGAACAT TCTACTCAAT TATTGGAAGC CCAGTTCAAT
AAATCGTCTA GAGAAGCAAC CACAGAACCT GAATTCGATA GCGATTCTGA ATCAGTGCTA
TCGAATTCTG ATGAAAACTT TAGTACTTCA GATGAGTCTG AACAAGAAAA CTCAGACACT
GAAAGAGTGA CACGCGCAAA GGACGGTGAC ATGTCTTTGT CTGTAGAAGA ATTGAAGCAG
AAGTATTCCA CCCTTCAGGA GTCTGTAGAG CCTACATCAT CTGCTCCTTC TGATAGAGAT
AATGATAGTG ATGATGACAG TGAAGAAGAG GAAGATGGCA TAGTCGTCAG CCAGGGTCTT
TCTGCTTTGT ACGGTGGGAG TGAATTGTCA GCCAGTGCAA CTCCACAGCT TGCAGATGTA
GAGTATACCG AAGAACAGAA GAAACTAATC GAGGAACTCA ATACTGAAGC GAGAGAAGAT
CCGGCATTGA ATTCTGATTC TGAAAGCTCA GGATTTTCGT CTGAAGATGA GAATGAATCC
GGCTCTGATG AAAGCGAGAC TGTCGAAGAG GACGACGAAG AAGAAGAAAA AGACGTTCCT
GACAAAAAGG AAAATGGTTA TGTTTCAAAC TTGGGCAGCC TCTTCAATGG TCGCAACGAT
GCCTCGGAAG AAGAAGAGGA AGGATCTTAT AGTGAAAGCG ATGGTAAGAC TAGCGAAGAT
GAAATGATGA GCACCACTGA TGAAGAAAGC GATGTCGTTG AAAACGGTGT GAAGCACGAG
GATGAAGATG ACAAAGTTAA AGAAGAAGAG GATATACCAA TGGAAGACGA AGTTAAACAA
GAAACAGAAG AAGGAGCCCT ACAAGAGATT AATGGCGCAA AAGTTAAAGA TGTTCCACTT
CCTTCCTTGC TAAGAGGTAC CTTGAGACCA TATCAAAAAC AGGGTCTCAA TTGGCTTGCA
AGCTTATACA ATAACGATAC TAATGGTATT TTGGCCGACG AGATGGGTTT AGGTAAAACG
ATTCAGACAA TATCTCTTTT GTCTTACTTG GCTTGTGAGC ACCACATATG GGGACCGCAT
TTGATTGTTG TACCTACTTC TGTAATGTTA AACTGGGAAA TGGAATTCAA AAAATTCGCA
CCCGGTTTTA AGGTCATGAC ATACTACGGG TCCCCACAAC AAAGAGCTCA GAAAAGAAAA
GGTTGGAATA ACCCGGATAC ATTTCATGTT TGCATTACTT CATACCAATT AGTCGTTCAG
GATCAGCAGT CCTTCAAAAG AAGAAAGTGG AGATATATGA TTCTCGATGA AGCTCACAAT
ATCAAGAATT TCAGGTCTAC CAGATGGAGA GCTCTTCTCA ATTTCAATAC GGAAAACAGA
TTGCTATTGA CAGGAACCCC CTTGCAGAAT AACTTAATGG AATTATGGTC GTTGTTATAT
TTTTTGATGC CTTCTTCTAA AGTGAATCAA GCAATGCCAG AAGGGTTTGC AAATTTGGAC
GACTTCCAAA CATGGTTTGG TAGACCAGTT GATAAAATCT TAGAGCAGAC CTCTGCTACT
AGCACGAGCG ATATTGTCGA CGAGAATGAG AAAACCACCC ATAGACTAGA TGATGAAACC
AGAAATACAG TGGCACGTTT ACATCAAGTC TTGAGACCCT ATTTGTTACG TCGGTTGAAG
AAGGACGTCG AAAAGCAAAT GCCAGGAAAA TATGAGCATA TAGTGTACTG CCGTCTCTCA
AAGAGGCAAA GATTTTTGTA TGATGATTTC ATGTCGCGTG CCAAAACGAA GGAAACATTG
GCATCGGGTA ATTTCTTGTC TATTATTAAC TGTTTGATGC AGTTAAGAAA GGTGTGTAAT
CATCCTGATC TTTTCGAAGT TAGACCTATT GTTACCTCTT TATCGATGCC CCGGTCTGTG
TGCAACAGTT TCTCGTCGTC TGCGGCTTTG ATTCGCAAAG AGTTGACAGA TGAGAATTTG
ATGAAGGGTA TCAATTTCAA TGTACTTAAC TTGGATATCA CGAACTCGGA CAACTTGAAC
TATTTCGTGT CTCAGTCAGC CAGCAAGCTA AAGTCATCGA AGGAATTGGA TGCCCAGATT
CAAAAGCTAT CGAATCTTGT TCCATCAGAA TTGGGTGATG TGCCTGATGT GTCCGATTAT
TTGAAGTACT ACCAGTACAT CAAGACATGT GAACAGATAG AGGTCCGTGA CAAACTCAAG
CATATACTCT ATTTAAACTC ATTGAGATGC AGTCGTTCTC CAATTTATGG AGAGTCGTTG
CTCCGATTCT TGACTAAGGA GAAGAAGAAA GAGGACAGTG ATCTTTACGA TAATCTTTTC
CTTTCGGTTA ATGACCGAGT CAGAGTTTTG GGAGATGTTA TTGAAAAGTT CTCTGTTATC
ACCCCAGCGG TCGTTGCATT AGATATGAAG GATCAAATTA TCCCTCTTTC TACCCAGAGA
AGAATCATGG ATGAAGTTGC TAATAACCAA ATCGAAAACC CATTTCATAA ATCACAAACC
AAACTCAGCA TTGCATTTCC AGACAAATCA TTGCTACAGT ATGACTGTGG TAAACTTCAG
AAACTAGCTA AACTCTTGCA AAATCTTACC GCTGGAGGTC ATCGAGCTCT TATATTTACA
CAGATGACAA AGGTTTTGGA TATACTTGAA CAATTTTTGA ATATCCATGG CTACAGATAC
CTGAGATTAG ACGGTGCCAC CAAGATTGAG GACAGACAGC TCTTGACTGA GAAGTTCAAT
AGAGACCCCA AGATTTCGGT GTTTATTTTG TCCACAAGAT CTGGTGGGTT AGGTATCAAC
TTGACTGGTG CCGATACGGT TATATTCTAC GATTCCGATT GGAATCCTGC GATGGATAAA
CAATGTCAAG ATCGTTGCCA TAGAATTGGA CAGAGTAGAG ATGTTCACAT TTACAGATTT
GTTTCTGAGT ACACCATCGA GTCGAACATT TTGAAGAAAG CAAACCAGAA GAGACAATTG
GACAACGTTG TTATACAGGA AGGTGAGTTC ACCACAGACT ATTTTGGTAA GTTCTCCGTC
AGAGATCTTG TTAATGATAC TACTATTGCT GATCAAATTC CTGATAGAGA ACTTGACTTC
ACTGGAGATG CCAAGATGGA GAAGGCATTT GCCCAAGTTG AAGATGAAGA CGATAGAACT
GCTGCCAATG AAGCAATGAA AGAAGTTGCT GTTGACGATG AAGATTTCGA CGAAGAAAGC
AAATCGGCAA CCACTGGAGG CACTCCAGCC CAGACCCCTG GTCCCGAGGG TTCGGTACCT
CCAGTTGGTG TACCCGCTGT TAAACAGGAT GAACCTGTTG ATGTCGACTA TGAGGAAGGA
ATCGGCCACA TCGATGAATA CATGTTAAGA TTCATTGCCG ACGGCTACTA CAACGACTGA
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| Protein sequence | SKSEKLARII TNFNLSVNEL FHLREYQSIV SWNPSDFSTA IPGHQIPELF EIFTQDAANQ
IEWDANVEDL SSIPLRLQKK VLAEREKKLL LKYPFKNDVI DMSKQLEREI ISRALEEPEG
ETHTTTKSNG SVPKPQKQAN GHSKTLKSKK KVKQKRIDEQ EVDVEIEDEE EDPDDEINTN
YRLKAVKYTI APPLVTHPSH IPAWRPEISN ADGIQDGSEE HQILEFNPEP ITVVKNRDGN
IVAPNITSKL HNYLESNYKV AIVDDSNVDY NNTAEEFEVV TAQQENMLKE IYHKCTIDNS
LELNGDKIER RKIVLPQASN LRQTSDPFRN TATVTPKVQG STNNLTHHDY LLNQGISFAK
LHQQMRKQHS SRTKRIAQMV DQYFKRKNGE KDRLAREREL NLKKLSRLAA QAVKKRWTQA
NKVYSIIQQQ KEDELKQIQG REHLSQMLEH STQLLEAQFN KSSREATTEP EFDSDSESVL
SNSDENFSTS DESEQENSDT ERVTRAKDGD MSLSVEELKQ KYSTLQESVE PTSSAPSDRD
NDSDDDSEEE EDGIVVSQGL SALYGGSELS ASATPQLADV EYTEEQKKLI EELNTEARED
PALNSDSESS GFSSEDENES GSDESETVEE DDEEEEKDVP DKKENGYVSN LGSLFNGRND
ASEEEEEGSY SESDGKTSED EMMSTTDEES DVVENGDIPM EDEVKQETEE GALQEINGAK
VKDVPLPSLL RGTLRPYQKQ GLNWLASLYN NDTNGILADE MGLGKTIQTI SLLSYLACEH
HIWGPHLIVV PTSVMLNWEM EFKKFAPGFK VMTYYGSPQQ RAQKRKGWNN PDTFHVCITS
YQLVVQDQQS FKRRKWRYMI LDEAHNIKNF RSTRWRALLN FNTENRLLLT GTPLQNNLME
LWSLLYFLMP SSKVNQAMPE GFANLDDFQT WFGRPVDKIL EQTSATSTSD IVDENEKTTH
RLDDETRNTV ARLHQVLRPY LLRRLKKDVE KQMPGKYEHI VYCRLSKRQR FLYDDFMSRA
KTKETLASGN FLSIINCLMQ LRKVCNHPDL FEVRPIVTSL SMPRSVCNSF SSSAALIRKE
LTDENLMKGI NFNVLNLDIT NSDNLNYFVS QSASKLKSSK ELDAQIQKLS NLVPSELGDV
PDVSDYLKYY QYIKTCEQIE VRDKLKHILY LNSLRCSRSP IYGESLLRFL TKEKKKEDSD
LYDNLFLSVN DRVRVLGDVI EKFSVITPAV VALDMKDQII PLSTQRRIMD EVANNQIENP
FHKSQTKLSI AFPDKSLLQY DCGKLQKLAK LLQNLTAGGH RALIFTQMTK VLDILEQFLN
IHGYRYSRLD GATKIEDRQL LTEKFNRDPK ISVFILSTRS GGLGINLTGA DTVIFYDSDW
NPAMDKQCQD RCHRIGQSRD VHIYRFVSEY TIESNILKKA NQKRQLDNVV IQEGEFTTDY
FGKFSVRDLV NDTTIADQIP DRELDFTGDA KMEKAFAQVE DEDDRTAANE AMKEVAVDDE
DFDEESKSAT TGGTPAQTPV GVPAVKQDEP VDVDYEEGIG HIDEYMLRFI ADGYYND
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