Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_52636 |
Symbol | YPT53 |
ID | 4851160 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 1082445 |
End bp | 1083167 |
Gene Length | 723 bp |
Protein Length | 230 aa |
Translation table | |
GC content | 45% |
IMG OID | 640392868 |
Product | GTP-binding protein of the rab family |
Protein accession | XP_001387436 |
Protein GI | 126274146 |
COG category | [R] General function prediction only |
COG ID | [COG1100] GTPase SAR1 and related small G proteins |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACG ACATTGACAT ACCTCCGCCT TCGTACAAGA TAGTCTTGTT GGGTGACTCA TCTGTAGGGA AGACATGTTT GGTACACAGA TTTATTACGA ACAAATTTGA CCAAAATACG GCGAACACTA TCGGGGCAGC TTTCATCACC AAAAAGTACA CATCTGCGAA CAAGCCAGAT AGGCAGTTGA AGTTTGAGAT CTGGGACACG GCCGGTCAGG AACGATACCG TTCACTTACT CCTATGTACT ATCGTAATGC CAAAGTAGCG TTAGTTTGTT TTGACATGAA CAACTTTGAA ACGACGTTCA AGACTGCGAA GTTCTGGATC GAGCAGATTG AATTAAACGG TGCTACTGAT GCGTCAGATC CCATAGAAAT ACGGCTCGTG GGAAACAAGA TGGATTTGTT CGACAAGCCG CAGCCAGAGG ATTTAACGGA AGAACAACAG AACAGGGCTA AAGACCAGAA ACAGGAGTAT ATAGACACCA TAGAAGAGTT CTGTAGAACT AACAACACTA TCACCTTCCA CAGGACAAGT GCGAAGGATG GCAGTGGGGT GACGGAGGTA TTTGATAGCA TTATCGATAA TCTTGATGAT GATTTCTTCA AGTTTTATTT CGATAAAAAG AGGGCCGAGT TGGAGGCTGG ACGGGACGGA GACCAACTCT CGAATATATT GGGTAGCCGT CTTCAGAATA CCGCTACCTC ACGTTGTTGC TGA
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Protein sequence | MENDIDIPPP SYKIVLLGDS SVGKTCLVHR FITNKFDQNT ANTIGAAFIT KKYTSANKPD RQLKFEIWDT AGQERYRSLT PMYYRNAKVA LVCFDMNNFE TTFKTAKFWI EQIELNGATD ASDPIEIRLV GNKMDLFDKP QPEDLTEEQQ NRAKDQKQET NNTITFHRTS AKDGSGVTEV FDSIIDNLDD DFFKFYFDKK RAELEAGRDG DQLSNILGSR LQNTATSRCC
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