| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_50481 |
|---|
| Symbol | |
|---|
| ID | 4840822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | - |
|---|
| Start bp | 572975 |
|---|
| End bp | 574390 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392137 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386705 |
|---|
| Protein GI | 150866939 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.830079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.176883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGAA AGACCCAGAA CTTGCACTCG TTGAGTAGGG GCCGTGTCCG TGCCTCTATG
AACAAGTACA ATTTGTTCAA CTTATATAAA AAGGCTCCAG TGAGATATGA TGGAAAGACT
TTGTACCAAC AGAAGTGGAA CGCTAAAGCT GAAACCAGAG CTTATCACGG TGAACATTTG
ACTGAAAAGC GTTGGAAGGC CATCTTTGAT CCTTCATTAG AAACCGTAGC TCAATTGGAT
GCTTCATTGA AGGGTTCTAA AGTAGCACCT ACACCTATGA CTCTCCAGAC CTATGCCTCT
TTAGAGAAGA GATTGGAGTT GGCTGTCTTC AGATCGATGT TTGCTTCCTC TGTGAGACAA
GCTCGTGAGT TCATTCTTGG TGGAAGTGTT CTGGTCAACG GTGTTGTGAT AAAGCACCCT
TCATTCCCCT TGAAGAGTGG AGACATTTTC CATGTCAAGC CAGAGAAGGT CTTGTTAGCT
ATGGGCAGAA CCAAACCTTC GCTTGAAAAA GCCATTAAGG TCGACAATCA ACAGATCAGC
GCCTGGAACC GCTATGTGAA AGCAGCACAA GAAAATCCCC GCGAAGTATG GGAAGCCAAA
CAGAAGAAAC CAGCATCTTT AAATACCATC AGAAACATCA ACGGTTCCGA ATCGGCCGAG
GAATTCAACA AGAAAATCGA ACAAACTATG AAATCGCAAC AGAATGATGC TACGCGTGAG
TCTATTTTAT TGAAGATTAT CAGTTTGGGA AGAGGAATCG AAAGCAACGG CGGAGTCGTT
TCTGCAGAAA CGTTTAAGGA ATTCAACTAC GACAACGAAA GCAACAGCAA CAATGCCCAG
AAGGCTCATA ACGTGTACAA AAAGTTGTCT GATGCTAAAC ACAAATTGAT TGGCGAACAC
AATATCGAAA ATGCAGCTGA GTTTGTCAAT AAGAAAGCAG ATGATTCTGA ATCTGCCGCG
GACAAACAGT TAGCTCGTTC CGTCAAGCAG ATTCTCCGTG AGCTCCAGAA GTCTACCTGG
GAAGCCATAC GTGTTGGAGC CCAGCAGCAA CAATCTGGCA AGGTGCTCAC TGCCTCATTC
ACGTCTGATT TCGTTAAGCT GTTGGTGCCA CATCCAGCCT TGAACAAGGA ATCTATTCTT
GAAGACGAGA CTCTAGCCAA CATCAAGTTC CCATGGCAAA AATCGTTATT TGGCCGTCAA
GATCCTTCCA AGCCATACTT CACTCCATGG ACACCACGTC CTTTTATCGG TGCCTTTGCC
ATCTTGCCGT CGCACATCGA GGTATCATTC AGCACATGTC ATGCTGTTTA CTTAAGAGAC
CCTATCGCCA GACCAGGTCA TTCTGAGGTC ATTTCTCCTT TCCCCGACCA CACCCACGAA
AGAGCCTATA TGTTCTACGC CAGAAAGGGA TTGTAG
|
|---|
| Protein sequence | MPRKTQNLHS LSRGRVRASM NKYNLFNLYK KAPVRYDGKT LYQQKWNAKA ETRAYHGEHL
TEKRWKAIFD PSLETVAQLD ASLKGSKVAP TPMTLQTYAS LEKRLELAVF RSMFASSVRQ
AREFILGGSV SVNGVVIKHP SFPLKSGDIF HVKPEKVLLA MGRTKPSLEK AIKVDNQQIS
AWNRYVKAAQ ENPREVWEAK QKKPASLNTI RNINGSESAE EFNKKIEQTM KSQQNDATRE
SILLKIISLG RGIESNGGVV SAETFKEFNY DNESNSNNAQ KAHNVYKKLS DAKHKLIGEH
NIENAAEFVN KKADDSESAA DKQLARSVKQ ILRELQKSTW EAIRVGAQQQ QSGKVLTASF
TSDFVKSLVP HPALNKESIL EDETLANIKF PWQKSLFGRQ DPSKPYFTPW TPRPFIGAFA
ILPSHIEVSF STCHAVYLRD PIARPGHSEV ISPFPDHTHE RAYMFYARKG L
|
|---|
| |