| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46944 |
|---|
| Symbol | TOP1 |
|---|
| ID | 4839471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 213595 |
|---|
| End bp | 215937 |
|---|
| Gene Length | 2343 bp |
|---|
| Protein Length | 780 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640390786 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | XP_001385059 |
|---|
| Protein GI | 150865726 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3569] Topoisomerase IB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000227493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCCT CTGAAGACGA AATCGTTCTT TCGAAGAGAG TCAAAAAAAC TTCCAAAAAG
AACGGATCCA TGACCAGCAC TGCTGCCAGT GAACTCGACG ATGATCTCCC ATTGTCACAG
CGTAACAACG GTGTTGTCAA ATCCAAAGAC ACATCTGTAG ATGAAGACTA CGAAGAGCCA
ATCGCAGAAA AGGTGAACAG AAAACGTAAG AGTGAAAATG GCTCTTCTAC AGTGCCTAAG
AAAACAAAGA AGGTCAAAAC CGAGACAGAT GCATCAGCGA AGAAGTCAGA TAAAGAACCG
AAACAAAAAA GGGAAACAAA ACCAAAGAAA GAAACAAAGT CCAAAAATGC TGCAGTGAAA
GCAGAGAAGG ATGAAGACGT TCCTACTTCG CAAAACGAAG AGAAGGATGA AGATGAAGAT
GAAGGCTATA AATGGTGGGA AGCTGAAGAC GTTGATGGAG TTCAGAAATG GGAAACTTTG
GAACACAATG GTGTTCTTTT CCCACCTGAG TATGAACCTC TCCCTCTGCA TGTGAAGTTG
TACTATGATG GGAAACCAGT GAAGTTGTCC TTAGAAGCTG AAGAAGTCGC TGGATTCTAT
GGTGCCATGT TGGAAACAGA TCATGCCAAA AACCCTGTTT TCCAAAAGAA CTTCTTCGGT
GACTTCTTAG ACGTAATCAA GGAAACTAAT GGTTCTGATG TTGAAATCAA AGACTTTGAA
AAACTCGACT TCTCCAAGAT ATTCGCTCAC TTTGAGAAAC TCAGAGAGGA GAAAAAGCTT
CTCACGAAGG ATCAAAAGAA AGCCATGAAG GAAGAAAAGG AGAGAATTGA AGAACCATAC
AAGACTTGTT TATTCAACGG TCACAAGGAA CTCGTAGGTA ATTTCAGAGT AGAACCTCCA
GGTTTGTTCA GAGGTAGAGG AGCCCATCCT AGAACTGGTA AGTTGAAGAG AAGGGTCTAC
CCTGAGATGG TTACTTTGAA CATTGGAGCT GGTGCTAAGA TACCTGAAGC TCCTCCGGGT
CATAGCTGGG GTGAAATCAA GAACGATAAC ACCGTTACTT GGTTGGCTAT GTGGAGAGAA
AACATCGCCG ATTCATTCAA GTATGTTAGA TTTGCTGCCT CGTCTTCCAT TAAGGGTGTT
TCTGATTTCA AAAAGTTTGA AACGGCCAGA AGATTACGTA GTCATGTAGA TGCCATCAGG
AAGGACTACA CTAAGATGTT GAAGAGCGAA TTAATGCAAG ATAGACAGAT GGCATCTGCA
ATTTATCTTA TTGATGTGTT TGCATTGAGA GCTGGTGGCG AAAAGGGTGA CGATGAAGCG
GACACTGTTG GGTGTTGTTC TTTAAGATAT GAGCATATTA CCTTGAAACC CCCTAACAAG
GTTATCTTCG ACTTCTTGGG TAAGGATTCC ATCAGATTCT ACCAAGAAGT TGAAGTTGAC
AAGCAAGTGT TCAAGAACTT GAGGATCTTC AAGAAAGCGC CTAAACAACC CGGTGATGAC
TTGTTTGATA GAATCAATCC TACGATGTTG AACAAGCAAT TGCAGAATTA CATGAAAGGC
TTGACAGCTA AAGTTTTCCG TACCTATAAT GCCTCGAAGA CAATGCAAGA TCAGTTGGAT
TTGATTCCAA ATGAAGGCAC AGTAGCCGAA AAAGTTGTGA AGTTCAATGC TGCTAATAGA
ACTGTTGCTA TCTTGTGTAA TCACCAGCGT ACGGTAAGTA AAGGACATGG CAGTTCTGTT
CAGAAAATCA ATGACAAGTT AAAGGAGTTG ATGTGGCAGA AAATAAGATT GAAGAGAATG
ATACTTGTTT TAGAACCAAA ATTGAAGAAT AAGCAGCTGC ATTATTTTTG TGAAATCGAT
GATCTTGCAA AGGAAGATGA AGAGCACATT CATCACACAG TAATTGCTAG ACAAAGAGAA
CAGGTCTTGA AGAAGATGCA AAGAGATAAT GAAAAACTAA AATTGGAAAA GCAGGAGATT
TTGACTGAAA AATCAGATGA AATCAAAGAA AAGATGGCCA AGATTGATGA TCTTGAGAAG
GAATACAAGG CTGAATTGAA TGGCGCAAAA CCAGAAGTAA AGAAGAATCT CACTGTGGAG
AAGTTGCAGC AGCAGGTTGA AGTGATTGAA AACAGAATTG TTACCACGAC TCTTCAATTG
AAAGATAAGG AAGACAATTC TGAAGTTTCC TTAGGTACAT CCAAGATGAA CTATATCGAT
CCAAGATTAA CGGTGATGTT TTCGAAGAAG TTCGATGTTC CCATCGAGAA ACTCTTCACC
AAGACCTTGC GTGACAAATT CAAATGGGCC ATCGAATCAG CAGATGAAAA CTGGAGATTC
TAA
|
|---|
| Protein sequence | MSSSEDEIVL SKRVKKTSKK NGSMTSTAAS ELDDDLPLSQ RNNGVVKSKD TSVDEDYEEP
IAEKVNRKRK SENGSSTVPK KTKKVKTETD ASAKKSDKEP KQKRETKPKK ETKSKNAAVK
AEKDEDVPTS QNEEKDEDED EGYKWWEAED VDGVQKWETL EHNGVLFPPE YEPLPSHVKL
YYDGKPVKLS LEAEEVAGFY GAMLETDHAK NPVFQKNFFG DFLDVIKETN GSDVEIKDFE
KLDFSKIFAH FEKLREEKKL LTKDQKKAMK EEKERIEEPY KTCLFNGHKE LVGNFRVEPP
GLFRGRGAHP RTGKLKRRVY PEMVTLNIGA GAKIPEAPPG HSWGEIKNDN TVTWLAMWRE
NIADSFKYVR FAASSSIKGV SDFKKFETAR RLRSHVDAIR KDYTKMLKSE LMQDRQMASA
IYLIDVFALR AGGEKGDDEA DTVGCCSLRY EHITLKPPNK VIFDFLGKDS IRFYQEVEVD
KQVFKNLRIF KKAPKQPGDD LFDRINPTML NKQLQNYMKG LTAKVFRTYN ASKTMQDQLD
LIPNEGTVAE KVVKFNAANR TVAILCNHQR TVSKGHGSSV QKINDKLKEL MWQKIRLKRM
ILVLEPKLKN KQSHYFCEID DLAKEDEEHI HHTVIARQRE QVLKKMQRDN EKLKLEKQEI
LTEKSDEIKE KMAKIDDLEK EYKAELNGAK PEVKKNLTVE KLQQQVEVIE NRIVTTTLQL
KDKEDNSEVS LGTSKMNYID PRLTVMFSKK FDVPIEKLFT KTLRDKFKWA IESADENWRF
|
|---|
| |