| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_41155 |
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| Symbol | |
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| ID | 4837505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 232210 |
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| End bp | 233829 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640388820 |
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| Product | predicted protein |
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| Protein accession | XP_001382810 |
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| Protein GI | 150864109 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | [TIGR00907] amino acid permease (GABA permease) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.745721 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0472974 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGACT ACAGTTTAAA TGAAAAGGCT GCTGAAGTCT CGACAGACTT TTTCAACAAC
TCCAAGACAG ACGATGCAAA TCTCAAGGAG TTTCTGGCTA ACGATGTTCA AGAAACCATC
TCCATCACCC ACCAGGGTGG TTCGTTGAAG AGAACTTTCT CCACCTATTC TGTCATCTGT
ATTGGTTTTG GTTTGACCAA CTCGTGGCTC GGTATCTCCG CTTCTTTGAT CACTGGTATT
CAGTCGGGTG GTCCACTTAT GATTATCTAC GGTATTCTTA TTGTTGTTGT TATCTCCTAC
TGTATTGGTA TCACCTTGTC CGAGTTGTCT TCTGCTATTC CATCTGCTGG TGGCCAGTAC
GTGTGGTCCA GAGTGTTGGC TCCCAAGAAA TACTCCAGTT TCTTAGCTTA CCTTTGTGGT
TCTTTGGCTT GGGCTGGTTC TCTTTTCACC TCTGCCTCTA TGGCTCTCAG TATCGCTCAG
GAGTTGATGG CTTTCTGGGT ATTGGCTCAT CCAGATCATG TTGTCCATAA ATGGCAATTG
TTTGTCATTT ACCAGTTGAT CAACGCCTTC TTAGTAATCT TCAACTGCTA CGGGAAGTGG
TTGCCATACT TGGGTAACGG TGTTTTGTAC GTTTCCATTG TTTCTTATAT AACTATCACC
ATCACTGTCT TGGTTTGCTC CAGAGGTAAC TACCAAGATG CCAGCTTTGT TTTCACCAAG
TTCGACAACA ACACTGGCTG GTCGTCTGCT GGTATTGCCT TCATTGTTGG TTTGATCAAC
CCTAACTGGT CCTTTTCTTG TTTGGACTCG GCCTGTCATT TGGCTGAAGA AACCACAAAG
CCTAGAACAG ATATCCCCAA GGCTATTCTT TCCACTGTCA CGATTGGTTT TGTCACAGCT
TTCACATACT CGATTGCCAT GTTCTTCTGC ATCAGAAACT TGCAAGATAT CTTCGACAAC
AGTACCGGCT TGCCTATCTT GGATATCTAT TACCAGGCCT TGGGCAACAA AGCTGGTGCT
TTAACTCTTG GTGCCTTGGT CTTTGCTACT GCTTGTGGCT GTACCATTTC TTGTCACACT
TGGCAAACCC GTTTGTGTTG GTCTTTTGCT AGAGACAACG GTTTGCCTTT CTCCAAGTAC
TTGGCTATCG TCGACCCCAA GTTGGGAGTT CCTTTGAATG CCCACTTGTT CTCTTCTTTC
CTTGTAGGTC TCTTAGGTTT GCTTTATCTT GCCAGTGATG CTGCCTTCAA CTCCATGGTC
GTTGGTTGTA TCACATTCTT GTTGTTGAGT TACTTGGTGC CTACAATCTC CTTGTTGTAC
AGAGGTAGAG ACAACATCAA GCACGGACCT TTCTGGTTGG GCAAGTTCGG TATGTTCTGT
AACTACGTGA CCATCGCCTG GTCCATCTTT GCCTGTATCT TCTTCTCATT CCCATCGTTT
ATGCCTGTTA CAGCCAACAC CATGAACTAT GTCTCTGCCG TCATTGCTGT CTACTTGATC
TGGGCTCTTG CCTACTGGTT CTTCCCCATC AAGAGCTGGT CTTGCAGAGA ATACTTCGCT
GGAGGTCTCC ACAACAACGA AGAAGTCGAG TTCCCAGACG TCTGCTTGAC CGACTTGTAA
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| Protein sequence | MSDYSLNEKA AEVSTDFFNN SKTDDANLKE FSANDVQETI SITHQGGSLK RTFSTYSVIC
IGFGLTNSWL GISASLITGI QSGGPLMIIY GILIVVVISY CIGITLSELS SAIPSAGGQY
VWSRVLAPKK YSSFLAYLCG SLAWAGSLFT SASMALSIAQ ELMAFWVLAH PDHVVHKWQL
FVIYQLINAF LVIFNCYGKW LPYLGNGVLY VSIVSYITIT ITVLVCSRGN YQDASFVFTK
FDNNTGWSSA GIAFIVGLIN PNWSFSCLDS ACHLAEETTK PRTDIPKAIL STVTIGFVTA
FTYSIAMFFC IRNLQDIFDN STGLPILDIY YQALGNKAGA LTLGALVFAT ACGCTISCHT
WQTRLCWSFA RDNGLPFSKY LAIVDPKLGV PLNAHLFSSF LVGLLGLLYL ASDAAFNSMV
VGCITFLLLS YLVPTISLLY RGRDNIKHGP FWLGKFGMFC NYVTIAWSIF ACIFFSFPSF
MPVTANTMNY VSAVIAVYLI WALAYWFFPI KSWSCREYFA GGLHNNEEVE FPDVCLTDL
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