Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_40593 |
Symbol | DBP8 |
ID | 4837198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | + |
Start bp | 1363370 |
End bp | 1364707 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640388513 |
Product | Dead-Box Protein 8, ATP-dependent helicase involved in rRNA processing |
Protein accession | XP_001382482 |
Protein GI | 150863861 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTTG AGGATCTCGG AGTTTCCCGG TGGCTCTCGG AAGCCCTTGC GGCCATGAAG ATCCATACAC CAACAGCCAT TCAGTCAGGA TGTATACCCA AGATTCTTCT GGGACACGAT TGTATAGGAG GTGCCAAAAC AGGTAGTGGT AAGACAATCG CATTTGCTGC TCCTATGTTA ACACAATGGT CTGAAGACCC CTTTGGAATT TTTGGCTTAG TTCTTACTCC TACTCGTGAG TTGGCACTTC AAATTGCTGA ACAGTTCGCT GCCTTGGGAG CTTCCATGAA TATCAAAATT AGTGTAGTTG TAGGAGGGGA AGACTTCGTC AAACAGACGC TTGAGCTCCA GAAAAAGCCT CATTTTGTCA TAGCTACTCC TGGAAGATTG GCGGATCATA TCTTGAACAG TGGAGAAGAA ACGATCTCTG GACTCAGACG AATCAAGTAT CTTGTACTTG ATGAAGCAGA CAGACTTTTG AGTAATAGCT TTGGTGGAGA CTTGGAGAGG TGTTTTTCTG TCCTTCCGCC TTCTGAAAAG AGACAGACCT GTTTGTTCAC AGCTACGGTA ACTGATGCAG TTAGAGCGTT GAAGGAGAAG CCTCCGGCGC AAGGAAAACC TCCTGTATTC TTGCACGAAG TAGAAACCGT GGACCAAGTG GCCATCCCTT CGACTTTGTC TATCAAATAC GTCTTTGTTC CTTCCTATGT CAAGGAAGCT TACTTAAACA GCATTCTCCG CTTGCCTCAG TACGAAAAGT CGACAGCGGT GATCTTTGTA AATAGAACCA CCACGGCCGA AGTGTTGAGA AGAACACTCC GGAAGTTGGA GTTCCGAGTA GCTTCGTTGC ACTCGGAGAT GCCGCAGAGT GAAAGAACGA ATTCTGTGCA ACGTTTTAAA GCTGGTGCAG CCAGAATCTT GATTGCTACC GATGTGGCTT CTAGAGGGTT GGATATACCG TCTGTTGAAT TAGTAGTAAA CTTCGATATT CCAGCTGATC CCGACGATTT CATTCATAGG GTCGGTAGAA CTGCCAGAGC AGGAAGAAGT GGTGATGCCG TTACTATAAT CGCGGAAAAA GATATCGACA GAATCGCTTC TATCGAAGAG AGAATAAATA AGAAAATGGA GTTATTGGAA GAAGTCACTG ACGATAGTGT GATCACAGAC TCGTTGACGG CAACTAGTGT GGCCAAAAGA GAGTCACTCA TGGAGATGGA CAAGGAGAAT TTTGGAGAGA AGAGAAAGAT TAATAGAAAA AAGCGTGGTC TTGAGACTGA AAAGATCAGG GTGGTGAAGA GCAAGAAGGA GAAATCCAAG AAGTCTCTTA GGCAATAG
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Protein sequence | MSFEDLGVSR WLSEALAAMK IHTPTAIQSG CIPKILSGHD CIGGAKTGSG KTIAFAAPML TQWSEDPFGI FGLVLTPTRE LALQIAEQFA ALGASMNIKI SVVVGGEDFV KQTLELQKKP HFVIATPGRL ADHILNSGEE TISGLRRIKY LVLDEADRLL SNSFGGDLER CFSVLPPSEK RQTCLFTATV TDAVRALKEK PPAQGKPPVF LHEVETVDQV AIPSTLSIKY VFVPSYVKEA YLNSILRLPQ YEKSTAVIFV NRTTTAEVLR RTLRKLEFRV ASLHSEMPQS ERTNSVQRFK AGAARILIAT DVASRGLDIP SVELVVNFDI PADPDDFIHR VGRTARAGRS GDAVTIIAEK DIDRIASIEE RINKKMELLE EVTDDSVITD SLTATSVAKR ESLMEMDKEN FGEKRKINRK KRGLETEKIR VVKSKKEKSK KSLRQ
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