| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31007 |
|---|
| Symbol | |
|---|
| ID | 4837982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 1499283 |
|---|
| End bp | 1500326 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640389297 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383577 |
|---|
| Protein GI | 150864655 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0164] Ribonuclease HII |
|---|
| TIGRFAM ID | [TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.718365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.389801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGAC CACTGTCCGT GGAAGCTCCT GAGCTGGAAA GTGCAAGAAA AAGGAGGAAA
TTGGAAACTG GCACGGCTTC AGCAGAAGAA GCTGGTGATT CAAGACCATA TCCTTTGTCA
GTAACAAGCA TAGAGAACCA TTTTGAATTC AAGTCATCAA CATATCATTC GGCAATCCCC
GTAGAAGTTC TCGAGAATCC AGACGAACCA GTTGTCTTGG GAGTAGATGA AGCTGGCAGA
GGTCCAGTTT TGGGTCCAAT GGTGTATGGC ATTGCATTTG CATTGGAGAA GTATCTGACA
AGATTGCAGA AGGAATATGG GTTTGCCGAT TCCAAGACTT TAAAGGAAGA GAAAAGAGAT
GAACTATTCT ACAGCATAGA GGATGAAGCG AATGAGCTTA ACAGAAATGT TGGCTGGGCT
ACTACTACGA TGACAGCTAG AGACATTTCT TCAGGGATGT TACGTTCAGT TTTGGGAATA
GGCAACTACA ACTTAAACGA ACAAGCCCAC GACACTACCA TTCAGCTTAT CAAGGAAGTT
ATTGCCAAAG GAGTTAATGT GAAGAAAATC TACGTAGACA CAGTAGGTCC CCCTGTGACG
TACCAGGCCA AATTGCAGAA GATATTTCCA GAAACGGAAG TTACGGTTGC GAAAAAGGCA
GACAGTATAT ATCCCATAGT AAGTACTGCT TCCGTGATGG CCAAGGTGAC AAGAGACGCC
AATATCAGGT GGTATAACCA CAATTTGGAT GTGTTGAAGG GCCACAAATT GGGTTCAGGC
TATCCCAGTG ACCCCAATAC CAGCAAGTGG CTCAATGGTA ATGTCGACAA GGTTTTTGGC
TGGTGCTACG GGTTTATTCG ATTCTCATGG CAGACAGCCA AGGACTCGTT GGTGAAACAC
GACGGGGTAG AGGTGATTTA CGAAGATGAA TGTGTAAAGC AGGACAATGG ATATGGCAAT
GTCAGCGAGT ATTTCAGCCA TAAGGACGAG CCTGTGAGAG GGAGCATCGA TAAGTTGTAT
TATAGTAGCG GAGTGAAACT TTGA
|
|---|
| Protein sequence | MSRPSSVEAP ESESARKRRK LETGTASAEE AGDSRPYPLS VTSIENHFEF KSSTYHSAIP
VEVLENPDEP VVLGVDEAGR GPVLGPMVYG IAFALEKYST RLQKEYGFAD SKTLKEEKRD
ELFYSIEDEA NELNRNVGWA TTTMTARDIS SGMLRSVLGI GNYNLNEQAH DTTIQLIKEV
IAKGVNVKKI YVDTVGPPVT YQAKLQKIFP ETEVTVAKKA DSIYPIVSTA SVMAKVTRDA
NIRWYNHNLD VLKGHKLGSG YPSDPNTSKW LNGNVDKVFG WCYGFIRFSW QTAKDSLVKH
DGVEVIYEDE CVKQDNGYGN VSEYFSHKDE PVRGSIDKLY YSSGVKL
|
|---|
| |