| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_27987 |
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| Symbol | VCC3.1 |
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| ID | 4850782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1841 |
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| End bp | 8191 |
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| Gene Length | 6351 bp |
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| Protein Length | 2116 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640392490 |
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| Product | vesicle coat complex AP-3 |
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| Protein accession | XP_001387243 |
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| Protein GI | 126273507 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.643082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACTC AAGCACTAGG CTATTCAATT CATAATCCAA TAACTTTGGA TCTGGACCTG
GATCTGGATC TGGACCAGAA CTTCGAAGAT GCTCTAGATG ACTTCAGCCA AGTAGATATC
AAATGTGAAA ATTCCAATCT CATTTCTACC GATGAGCATA TTTGGTCGAG TCCTCAATCA
TTTAGACAGA GTCTGCCATT CTCATCAATA CAAGCTACTC CATTGAGGAC AAATCTGTTC
AAACACGAAC TTGACTACTT GGCCAAAAAT TACTTTGTGT TTGTTGAGCC TCTAGGATAC
TTCTATCTGG AAAAAAGACA TTTTTTCATC TCTTCAGATT CAAAATATGC TACTTCCAAG
TTATATATAA AGTCGAAAGA AAGATTTCTT GACCTCATTA GCAAACTAAC AAAACAATCA
CCTTATTACA ACCAAATAGA ACGTGAGTCA AATATTGTGA ATGTGGCTAC TATTCCAAGC
CCTATCCCTG GCATTGAAAT AGAAGAATTT GCCTTCTGTG ATTCCTGTAA ATACACCAGC
TGTATTGGGC GCGTCCCAGT GAAATGTACC AGTCATGGAT ACATGAGAAG GGGTGAAGGC
TATAGAGTGG AACTGGGAGG TTTCTTTCTA TTGAAGGAAT TCCCACGTAT GCCTTCTTTA
CCTGATACTC CTCCACCAAG CACTCCAAAT ATGTATGATC GTAGTCCGAC CATACCTTGC
TCTTCTCCCA TCCGCCGCCG ATCTCGCTTC ACCAATAGAG ACTTGCAAGT CGAATTCAAG
GGCCCTCTTA TCACCGAAAT CCGTGTGAGA GAATCTGAGA ATATGACCGC TGATGCCTTT
TTGCAAAAAT ACGCCAATAT CAAATTCATT CCTGATGTGG GGTTATACTG GCACGAACAT
GAACGTGTGT TTTTGGATAG AAACTCTGAA ATTGTTCACA AATCATTGTC TTCTATCATT
GACAAATGCA AGTTTCTTGA AACACACATG CATGCAGTAA TGCTGAATTC CTACTACTGG
TATTTGTTAG CCAGTGCTAA TACGCTGTCC GAGGTACATA TATGTCTTGA ATGGTTGAAG
GAACCTCTAA GTGGCATAGA ACCTTCAAAG ATCCAGTACT GCCCTGATTG CATCAATTCG
GCTATCATCG ATGACCATTG TGAGGTCGAT AACCTTAATG TTCTAACTGG GATGGGATAC
AGAATGGAGC TGGGGTCTAT TTTCTTATTA GCACTGGGTG GAGGAATGAC AGACATTTTG
GAAGATCAAC GAGAGGAGGC TCCCGATCTC GAATATTATG CCTCTGATTC TGGTGCTGTC
TTCCTGAGCG ATGAACAAGA AGCTGAGGGG TCAGTAGACT ATGCTTCTGA TATGGAAAAT
CTCACAGTAG ATGGTCAAGA AGGTGACGAA TTGACAGCAG TAAATGGAGA ATCTGAGTCG
GATACTCTCT TAGAAGATGA AGTTCAAGAA GGTGACTTTA GATCATTTGA CGATTCTTCT
GATTCGGATA ATCTCTTTGT AGATGATGCA CAAGAAGATG ATGAAGAAAT GATTGACATT
GCAATAGATA ATGATACTGA ATCGGATAAT GACGAATCAG ACATTTCAGC CTATGATACC
ACCGATGATG GTCTTGATAA CGAACGTGAT TCAGAAGAAA ATATATTATA TGATGAAGAT
CCTGTTAGGA TCTCCACTGT TAGTGGATGG TCTCAGCTAA AAAAGAAAGG TATTTGTCAA
ATTAGCAATC TTCTTTGGCT GAGAGGACAA CAACACTTCC TTGACATCAC CTCCAGGGCT
TTCAGATCGT TTCTCATGGG TACAGTGTCA AATGCACAAT ACACCCAGAT GTTGGAAGAT
GTCGAGGAAT GGGTCGATCT AATGCCTCAG TACTATAGAA TTCCAAAAGA TACCAAGGGT
AGAACATTTG AAATTCCCCT GCCCTTTTCA AGACTCCCTC CAAAAATACA TACCTACTGT
TCGGAATGTG GATTTGTAAT AGGATTCAAC GAGAACAATG AAAACTTGAG AAGCTCTTCC
CGTCATGCAA AGAATACTGG TCATGATAGA TTCATCAGTC GCCAAGGGTA TGCTATCAGA
GCCGCAACAG GATTCAATCT CTTGGTCATA TTTGGGTCTA ACGAAACAGT CAGTACATGT
GAATCGGAAG ATGGCGATTA TGATGATGAA GATATTGTTA TTCCTTCATT CGAAGAGGGA
CTGGGTTCAC CATTCACACC CCCTGAATTC ATAGTGGAGC CGTACTCCAC AGACGAAGAG
GCCAGCGACT ACGAACAAGA GCCTGAATCT CTTCCACCTC CATCTAAGGA AGAACAATAT
GAAGTGTCCG AACTATTGAA ACATTCCCAT GGGTTAGTTT ACGATCCTAT CTTCTACTTG
TACTACTACA TAACAGAAGA GCGGTATGTT GACGTGAATT CAAAGTTTTT CAAAAACACA
TTGGAAGATA TTGGTGACCA CAAAAGCCGC ATTCGAAACT TGGTGGACCG TGTCATTAGC
ACTCAAATCA TTGACTCTCG AAAATTCGAG AAGAAAGTAA CCAGAGGTCA CATCCACTGG
GCCAAAGAGT TGTCCGAAGT AGCTCGCTGG AAGAAGCTAT GCTTTTGTAA ACAATGCTAT
CAGGTATTCA AAACAAAAAC TGCATTTTCC AAGCACAGGC GTGAATATGC GAACATGAGC
GAAAGAGAAC ATGCTGGTCA TGATATAAGT GCGGATTTTA AAGGATACCT TTTGGAGCGA
CCAAAGGGCC TCTACTATGC AATTGGGATT CCAGATGATG TTGCTCAAGC CGAAGCTGCT
GAAGCCGAAG CTACCGCTAC TGCTGAAGAA ATTGCAAGTC TGAAATCGCA ATGGGTTATG
GGTGGGCCTG GGTGGACGGT GGAAGAATAT GATATCAAAG TGCAATGGTT GGAGGGCAAG
CTAGGTATGC CTCCCGACCA ATTCTTGGCC AAGCACAACT ACTTACTAGT GAAGGAGGTT
GGTTTATACT ACGATTTCAC GCAGAAGTGG TTCCGAAGTA TAACACACAG GTTGCTGAGG
AAGGTCTTCT TCGGCGACTT AATACTGACG GTGAGGCGTG AGTTAATATC TTACATGCTC
CACAATATGG ATAGAAAGTA TGAATACATG TTGGCACCCC GTCACCAGCA GCAAGTTGCT
ACTTTGGAAG CAGCAGTAAA ATATGACGGT CCAATGGTGG CGGTGGAAAG TGGCAACGAA
GAGCATCTAG ATTTCGAGTT GGTAGATAAT TGCATACAGC CAACTAAATA CTACATGTGT
CATGTGTGTA AGTTCATTGC CCACCACTCC AGCGTCTCCG CTCATATCAA ACAAGCCAAG
CACCAACGAG AAGAGGGACC TGAAAAACAT GTTGTGTATG GTTACAGTGT TCGGAATGTA
GAGGCTAAGA CAAACTACTT CCGAATTCAA CACAATCTAG CCAGTAGTTT TCACGAACCA
ACAGACAGCA CTGCTGACTC TCAAATTGTA GATCCGTTTT TATCCAGATA CAAAGCGCAT
GAGTATACAA AGTTCCGTTC ATTTTTGAAC ATGTCTAATG ACAAAAGATG GCCACGTTTG
GTACAATTGT GCAAGAAATA TGTAACCAAG AAAAGATTAG CTTTGAGCAT CGGATCTTCT
CTCTCAGCAC TCATCAAAAA CCCCCGGTTC TGTAGCACTC CAAACTCAGC CCTGCGATAC
GGACCCATGC TTGCCAGATT CCTCTTTGTT GCCATGAAAA TGTGCGAGTT GAAGGAACAC
AAAGCAATGG AAGAGTTTGA GCAAGTATTC TGTGCCAACA AAAAACAGGG ACTACGAAGA
TTTTTCGGTC AAATGACGAA ATTTGGTGCG TTCTGGTTGT TGTCTCCGGT ACTAGTGTTG
CAGGAAGACG ATTCAAACGC CATGGAAGAT GTCTTTATGA GCAGTCTAAT GGTGTGTCTT
CTTGATGAAG GAGGAATAGG ATTCAAGATC AAGTCGTACC GCTGCGATTT TTGCAGTGGT
TTATCTTTTG CATTCAAATG CATAGCTGTT GATGTGATGA AAAAAGACAA GTCTTATGTC
CGACCTTTTG TTGAGGATTG TAACAGGGCG GCATCCATAG CACTCAACTT TGGCCGATTT
TGCAAGTTCA GTGCCGATGT ACACTCGTTG AGTCCTCGTA CATTTGGAAG GACCATGAAC
GTGCTACATG TTGGAGACAA AATAAGAATA AATACATTTG AAGTCGGACT CGACGACATC
AAAAAATGGG TCCATACTGC CATTCAGCAA TATGTACTTG AAGTTGAGGA ACTTTTCATG
GACATCAACA TCACGCCGAC CATGGCCATG AATGAGATGA TGGCAGCACA AAAACCAAGA
GTTGTTGGAA TGCCTCAAAC TAGTTACAAC TGGGATCAAA GGGATATCGA CAGATGCTTG
GAAATTAACC TGGTTGATAA GTATGACATC AAGAGTCTTC AGTATTTCCG TCGCCGACTC
TCTAGATTGA ACGACTTGTT TTTTTACATG ATCTTGTTGA CGTGTGGGTC TCCGTATCGT
TTAACGGAAT TATACCTGGT TCTTATTCGT AATGAAGAAA GATTGGGAAG TAATGTGTTT
GTTGCTGATG GGATGCTTGG ACTCTTTACC AACAATGGAA AGAACAGTAT GAAGTATAGT
CGAGAACGTC CTATTCTCAA GATGTTGCCC GAAGAGGTGT CAGAGTGCTT GGCTCACTAT
ATCTATTTTG TCAGGCCATT CGAACACACT CTTGTCGAAT ACCAAGAACA AACCGGTTCA
TTGAGCCACA TAGAGTTCAA GAAACTAAGT GATAAATACA AGCTCCATTT GTTCGTGGGA
GAGAAACAAA TCAAAAACAG CACTACTCTT GGAAAATCGT TCCGTAAGTT CATAAATAAA
ACAACTCCAA AGCTTAGAGG AATCATGTAC GGTGAAATAA GACAAGTGCT TTCATATTTT
GTTGGGGCGA ACGTCTCTGG GATGATTGGA TTACAGATCA AGATTGACAA CACCCTTGCC
GAACAGGCTG GGCATTCGTT TAGTAGGTTT GTCGAAAGTT ATGCCACAAA TAGAGATGGT
TACAATCATG TAATGCTTCA ACGAATGAGA GACTGTCTGG CAGCCTGGCA TACGTGTTTG
GAGATGAGTA CTCTTCAGAT ATTTACGCCT AGCGTATTTA CTAGGAACGA ACCACCGAAA
TTGACAGGTG AAGAACTTAT AGAGGCTGGC AGACAGATGT TTGGACAACA CTTCAAGTTC
AAGGAGGGCC AGCAACAGGC TACATCGGAT GTGGCTAATT GCTTCAGTAT GATGGTTGCT
ATTGACCTGG GAAAGACGAC TTGTTGCATC ATTGCGATGT TGGCGGAGCG TACCCACAGT
CTTCGCCAGA CCGACCGAGG TAAAAAGACT CACTGTGTTA CGATATTTGT GGTACCTTAC
ATTTCTACAC TCAACTCCAC CATCCGCCAA TTGACCGAAA ATTTCAATGT GCGTACGTTT
GATGGCTCTG TTGGACAGGT CAACGACTAT GATGTGCTAT TGATGCTGCT TGAAGACGGC
CACCTTAGAT ATCTTAATCA GGTAGTCAGA CATTTTCAGT CTACGAACTA TCAAGGCAAG
ACCTATCTCC GCCGGGTAGT GGTTGACGAT GCCCATATCT TGCAGATGAA ACAATATGTG
GTCGATGGAA ACAAAAATGT ACCTGTTGTA TTTTTGACGT CATTTCTTCC ACAGAAGGAA
GACGCTACGA TGAGTAGATT ATTTAATATC AATTCCTTGG TAAGGGTGTC GTCACAGGAA
CCACTCTTGC CACATAAAGA ATTCACTCTT TTCAAGAAGC CTAATACCAC TTCAATATGT
CAGACGGTTC TAGAAAAAGT TAGGAGTTTC GGTTCGGCAA TTGTGATTGC TGAGTCTTCT
GATAAAGTGT CATACTTGGT AAGTCAAATG GCCGACGAGG TTCCATGTAT AGGTATCTAC
GGATCCCCAG TCAGCAGAAC AGCTGCTTTG AATAAGATGG CCAATGAGAA TATCAGGGTT
GTGGTTACTA CGGCAGAAGC AATGGTGGGT CTTCATATGT TGAAACCTAC AACCGTCTTG
TTTGCATATT CGATTAATAA TCCAATAGAA TTGCTTGTTG GCAGTCAAAT GAGCAGTGGA
AAGGTAGACA TGGTATTGCT CAACTTTTAT TCGTCTGAGT TTCAACGAGA CTTATTGGAC
ACTTGTGTTA ATTTAATGGT AACGAGACAT ATGCGTTTAA CGGAACAAAC TTGTTATGAG
GCTGGTAAGG AGCGGTGTCA TGCTTGTGTC AAAAAGAGAA GACATGCTTG A
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| Protein sequence | MNTQALGYSI HNPITLDLDL DLDLDQNFED ALDDFSQVDI KCENSNLIST DEHIWSSPQS
FRQSLPFSSI QATPLRTNLF KHELDYLAKN YFVFVEPLGY FYLEKRHFFI SSDSKYATSK
LYIKSKERFL DLISKLTKQS PYYNQIERES NIVNVATIPS PIPGIEIEEF AFCDSCKYTS
CIGRVPVKCT SHGYMRRGEG YRVELGGFFL LKEFPRMPSL PDTPPPSTPN MYDRSPTIPC
SSPIRRRSRF TNRDLQVEFK GPLITEIRVR ESENMTADAF LQKYANIKFI PDVGLYWHEH
ERVFLDRNSE IVHKSLSSII DKCKFLETHM HAVMLNSYYW YLLASANTLS EVHICLEWLK
EPLSGIEPSK IQYCPDCINS AIIDDHCEVD NLNVLTGMGY RMELGSIFLL ALGGGMTDIL
EDQREEAPDL EYYASDSGAV FLSDEQEAEG SVDYASDMEN LTVDGQEGDE LTAVNGESES
DTLLEDEVQE GDFRSFDDSS DSDNLFVDDA QEDDEEMIDI AIDNDTESDN DESDISAYDT
TDDGLDNERD SEENILYDED PVRISTVSGW SQLKKKGICQ ISNLLWLRGQ QHFLDITSRA
FRSFLMGTVS NAQYTQMLED VEEWVDLMPQ YYRIPKDTKG RTFEIPLPFS RLPPKIHTYC
SECGFVIGFN ENNENLRSSS RHAKNTGHDR FISRQGYAIR AATGFNLLVI FGSNETVSTC
ESEDGDYDDE DIVIPSFEEG LGSPFTPPEF IVEPYSTDEE ASDYEQEPES LPPPSKEEQY
EVSELLKHSH GLVYDPIFYL YYYITEERYV DVNSKFFKNT LEDIGDHKSR IRNLVDRVIS
TQIIDSRKFE KKVTRGHIHW AKELSEVARW KKLCFCKQCY QVFKTKTAFS KHRREYANMS
EREHAGHDIS ADFKGYLLER PKGLYYAIGI PDDVAQAEAA EAEATATAEE IASLKSQWVM
GGPGWTVEEY DIKVQWLEGK LGMPPDQFLA KHNYLLVKEV GLYYDFTQKW FRSITHRLLR
KVFFGDLILT VRRELISYML HNMDRKYEYM LAPRHQQQVA TLEAAVKYDG PMVAVESGNE
EHLDFELVDN CIQPTKYYMC HVCKFIAHHS SVSAHIKQAK HQREEGPEKH VVYGYSVRNV
EAKTNYFRIQ HNLASSFHEP TDSTADSQIV DPFLSRYKAH EYTKFRSFLN MSNDKRWPRL
VQLCKKYVTK KRLALSIGSS LSALIKNPRF CSTPNSALRY GPMLARFLFV AMKMCELKEH
KAMEEFEQVF CANKKQGLRR FFGQMTKFGA FWLLSPVLVL QEDDSNAMED VFMSSLMVCL
LDEGGIGFKI KSYRCDFCSG LSFAFKCIAV DVMKKDKSYV RPFVEDCNRA ASIALNFGRF
CKFSADVHSL SPRTFGRTMN VLHVGDKIRI NTFEVGLDDI KKWVHTAIQQ YVLEVEELFM
DINITPTMAM NEMMAAQKPR VVGMPQTSYN WDQRDIDRCL EINLVDKYDI KSLQYFRRRL
SRLNDLFFYM ILLTCGSPYR LTELYLVLIR NEERLGSNVF VADGMLGLFT NNGKNSMKYS
RERPILKMLP EEVSECLAHY IYFVRPFEHT LVEYQEQTGS LSHIEFKKLS DKYKLHLFVG
EKQIKNSTTL GKSFRKFINK TTPKLRGIMY GEIRQVLSYF VGANVSGMIG LQIKIDNTLA
EQAGHSFSRF VESYATNRDG YNHVMLQRMR DCLAAWHTCL EMSTLQIFTP SVFTRNEPPK
LTGEELIEAG RQMFGQHFKF KEGQQQATSD VANCFSMMVA IDLGKTTCCI IAMLAERTHS
LRQTDRGKKT HCVTIFVVPY ISTLNSTIRQ LTENFNVRTF DGSVGQVNDY DVLLMLLEDG
HLRYLNQVVR HFQSTNYQGK TYLRRVVVDD AHILQMKQYV VDGNKNVPVV FLTSFLPQKE
DATMSRLFNI NSLVRVSSQE PLLPHKEFTL FKKPNTTSIC QTVLEKVRSF GSAIVIAESS
DKVSYLVSQM ADEVPCIGIY GSPVSRTAAL NKMANENIRV VVTTAEAMVG LHMLKPTTVL
FAYSINNPIE LLVGSQMSSG KVDMVLLNFY SSEFQRDLLD TCVNLMVTRH MRLTEQTCYE
AGKERCHACV KKRRHA
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