Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_15102 |
Symbol | RDH54 |
ID | 4839521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009045 |
Strand | - |
Start bp | 1384858 |
End bp | 1387284 |
Gene Length | 2427 bp |
Protein Length | 809 aa |
Translation table | 12 |
GC content | 38% |
IMG OID | 640390836 |
Product | helicase |
Protein accession | XP_001385272 |
Protein GI | 150865881 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00429974 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TCAAAAGAAA GATATGCTGT TCAATGGAGG AAAAGAACCA ACAAAAAGAA CAAGACTTGG GACGGCGACG GATACATAGT GGTATACCGG GATGCCGCTT CTAACTCGTC TTTTACTATT GCATTCAAAC AGTTGGAGGC TAAAAATGTT ATAAGGAAAC AGTTCACAAA TGTGAATGTA GATCAGATTC TTCGAGGTTT GATCACTATT GGGCAAAACG AGCTCGAAGT CGATTACATG ATCAATACGG ATGCTGAGTT TCGTAGATTG ACAGGAGAAG AAGAAGAAGG ATCGGAGTCT TTGTCATCAA ACCTTTCCCA ATCTACAATA CCGTCTAAAC CATCAAAACC TATGGCATAC AGAAAAATGA TACCGAAGAA CTATGAGGTC ACCACTTCCA ATAGACATAC CCGTGCTCCT CTCTATAACG ATTCAAGGGC TATAGCTTTG CCTCGACCTC CTGGTGTGAA TGAGAATGAA CTTGTAGATG TATTGATAGA CCCTCATTTA TCTGTCAAGT TGAGACCTCA TCAGGTGGAA GGAGTCAAAT TTGTGTATGA ATGTCTTATG GGCTTCAGAG GAAATAATGG AAAAGGATGT CTTTTGGCTG ACGAAATGGG ACTAGGCAAA ACCCTTATGA CAATTACCGT CATCTGGACC TTATGCAGAC AGAACCCTTT TATCAAGCAG CCTAGGTCGA CTATTCATAA AGTATTGATA TGTTGTCCAG TTTCTCTTAT CAACAACTGG AAAGATGAGT TCAAAAAGTG GTTGGGTATG AATAAGTTAT CAATACTTAC GTTAGGTGGG AATGTCTCTT CGAACGATAG ACAAGATTTA GTTTCATTTG GCAATCTCAA TGTTTATCAA GTCTTAATCA TGAACTACGA GAAGGTTACG ACTTACCACC AAGAACTTTC CAAGATTAGG TTTGACCTAT TAGTTTGTGA CGAAGGTCAT CGTTTAAAGA GCAGTAGCAA TAAAGTCATG AACCATTTGA CTCTGTTCAA TATCCCCAGA AAGATCTTAT TAACTGGGAC ACCCATACAG AATGACTTAG TGGAGTATTA TACCATCATT AATTTCATCA ATCCTGGCAT TTTAGGCGAT TTCAAGTCAT TTCAGAAATC TTTTATCAAT CCAATTACTA GGTCTAGAGA TGTCACTTGC TTTGATCCAG TTGTGAAAGA GCAAGGATTG GAGATTTCTA ACAAATTGAT AGACATAACG AAGCAGTTCA CCTTAAGAAG AACACAATCA CTACTTCTTA ACTATTTGAC CGAAAAGACT GATGTTATAT TGTATGCTCC ACCAACAGAT CTCCAGAAAC GATTGTTCAG TTACATAATC AATCTAAAGT CATTCAACGA GTTGATGAAT GATTCAGCTT CCACTACGAC ACAAGCATTT ACCTTGATAA ACCTATTCAA AAAGCTATGT AATTCGCCGT CCTTATTGCT CGAAGACAAC TTCTTTTCAA AATTGATCAA AGGAGAGAAA GAAGAGATTG AGTTGCTTAA CAAGAATACA TTGACAACCT CGTCTGGAAA AATCAATATC TTGATTCCAT TATTGCTAGA GATCACGTCT TTCAACGAGA AAATTGTTCT CGTATCAAAC TACACCAAAA CTCTCGACTT ACTAGAAGCA GTGTTAAAGA AGTTGGATTT ATCCTTTTTG AGACTCGATG GATCTACTGC TAAGAACTTA CGGAACAAGT TGGTAAACCA ATTCAACAAG TCTAATATCA ATGTATTCCT ATTGTCTTCC AAAAGTGGAG GTATGGGTCT CAATCTTGTT GGAGCATCCA GATTAATTCT CTTCGATAAT GATTGGAACC CTTCTGTAGA TTTGCAATCA ATGTCTAGAA TCCATAGAGA TGGACAAACT CGTCCCTGCT TCATCTACAG AATTCTCACT ACTGGCACCA TTGACGAAAA GATATTTCAG AGACAGCTAA TGAAGAGCAA ATTGAGTTCC AAATTTTTGG ATAACGAATC CCAATCAACA TCCGATGTTT TTGACTATCG TGATTTGAAG AACTTGTTTG AAATTGAAGA GAACACAATC TCTAACACTC ACGATTTACT AGAGTGTGAA TGTACGGGCG ATGGACACAA CATTAGTGTC AGTCTTACAG ATAGTGAATC CGATTCTGAC GCAGAAGGAT TCCTCAGTGC TCATAGGCAG AGTCTGTGGA TGTCAGCTCT GGACTTGCGA GACAAACTTG AAAAGGATGA AAAGAAGAAA TTGTCAATCA AAGATGCTCT TAACGAATAT AGACATTTCG ACCCAGCCAC AGATGCTGAT AAAGTCTGTC AGCATATTAA CGACAAGGTA CTAGTTAATA TCATCAACAA CAAGGGTTAC AATAAGAAAA CATTTCCCAT CAGTTTCATC ATGACAAGGG TTTCTGACAG AACTACT
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Protein sequence | SKERYAVQWR KRTNKKNKTW DGDGYIVVYR DAASNSSFTI AFKQLEAKNV IRKQFTNVNV DQILRGLITI GQNELEVDYM INTDAEFRRL TGEEEEGSES LSSNLSQSTI PSKPSKPMAY RKMIPKNYEV TTSNRHTRAP LYNDSRAIAL PRPPGVNENE LVDVLIDPHL SVKLRPHQVE GVKFVYECLM GFRGNNGKGC LLADEMGLGK TLMTITVIWT LCRQNPFIKQ PRSTIHKVLI CCPVSLINNW KDEFKKWLGM NKLSILTLGG NVSSNDRQDL VSFGNLNVYQ VLIMNYEKVT TYHQELSKIR FDLLVCDEGH RLKSSSNKVM NHLTSFNIPR KILLTGTPIQ NDLVEYYTII NFINPGILGD FKSFQKSFIN PITRSRDVTC FDPVVKEQGL EISNKLIDIT KQFTLRRTQS LLLNYLTEKT DVILYAPPTD LQKRLFSYII NLKSFNELMN DSASTTTQAF TLINLFKKLC NSPSLLLEDN FFSKLIKGEK EEIELLNKNT LTTSSGKINI LIPLLLEITS FNEKIVLVSN YTKTLDLLEA VLKKLDLSFL RLDGSTAKNL RNKLVNQFNK SNINVFLLSS KSGGMGLNLV GASRLILFDN DWNPSVDLQS MSRIHRDGQT RPCFIYRILT TGTIDEKIFQ RQLMKSKLSS KFLDNESQST SDVFDYRDLK NLFEIEENTI SNTHDLLECE CTGDGHNISV SLTDSESDSD AEGFLSAHRQ SSWMSASDLR DKLEKDEKKK LSIKDALNEY RHFDPATDAD KVCQHINDKV LVNIINNKGY NKKTFPISFI MTRVSDRTT
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