| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATR_43828 |
|---|
| Symbol | |
|---|
| ID | 7203960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011671 |
|---|
| Strand | - |
|---|
| Start bp | 155090 |
|---|
| End bp | 157330 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | bacterial type voltage activated sodium channel |
|---|
| Protein accession | XP_002186288 |
|---|
| Protein GI | 219113409 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA GGTTACCGAT AGACTCCGTT GGTACAGGGA GAAGGAATCC GAAAAAGCCG
ACAGAGTTCG ATCATCAGGG AAACGATCAG CAGGTCGAGT TAGGACTGCA GGAGACTCAA
ACACGAGCTG CAGTGGCAGC GCAACGACAT GGCAGGAGAC TCAATCACAG CGAGGAGACT
GCAGGCGATG ACAGTGCTCT CTCGCATCTG CCTCACGGCT CGCAAATGTC GACTGAACCC
ACTAATGGCA AGTCTTACCG ATCATCTCGC GGGGAGCTTC CGATTATGAG GTTCCAGGAT
AGCGAGGCGG CGGCTGCTGC TAGTTCTGTG AGTGCTTCCT CGCAATCCTC TCCCACCAAC
CAGAGTGAAG CTGGTTCTAA CTTGCCGGGA TCTCCCATGC TGGGTGCCAG AGCTCCCTTA
TCCGCCGGTG CCAGTAGTAG ACCTTTTCGA AAATCGCTCA TTTCAAATCT CATGGATTTG
CCCTCCGAGT CGCACTGGGA GGATCGCGTC TCTGTTGAAC GCCCAAAATC GATTGTTCGA
CGAGCCCGGT TGTTGTGCGG AAAGGTCGTC GAAGCACCTG CCGTGCAACT CACGATTGTT
ACACTCATTG TCATCAACGC TATTTTGATG GGTGTTGCTA CTTTTGATTT CGTCACGGAT
CGCCCACACA TCAATCGCGC GTTTGAAACT ACCGACCGTG TCTTCTTGAT CATTTTCACA
ATTGAGTTGT CTTTGCAATT CATTTATCGG AGTTTGGGGC TATTTATGGA CGGGTGGCTG
GTGTTCGACT TCGTTATTGT CATCACCAGT TGGAGTCTGG AAAGTTTGCA AATTATTCGG
GCTTTTCGCG TATTTCGAGC CTTTCGTTTA ATCAATCGGG TGGGGCCACT TCGGGAGCTC
ATCATGGCGC TTGGAACCGT CATGCCGCGG ATGTACGCGA TTGGCACGCT GCTCCTTCTT
ATCTTCTACG TGTACGCGGT ACTCTTTACC GAACTGTTTC GGGATTTAGA GCTTTCCGAG
AACTATTTCG GATCTTTGGA CGTGGCCTTA TTCTCTTGCA TGCAGTTCAT GACGTTGGAG
TGGGCGGATA CAGCAAGAGA ATGTATGGAA CAACGGTCAT GGGCCTGGAT GCCTTTTGTC
AGTTTCATCG CCATTACCGG TTTTATCGTT TTCAACTTGA TTGTGGCGGT CGTTTGTGAC
GCCGTATCGG TTGTGGACCA GCAATCCCGG GCCGACAAGG CAGGGAATGT CGAAACGGAC
TTGATGAAGT TACACCACGC ACAGGAGCGG TTACAGGAAT TGTCCGAAAC TGTAGACGAT
ATGCGAACGC GACACGAAAA ACTTCAACGG ACGATACTAC TGTTGGGCAC AACGCTGCAA
TCATCGAGTG CAATTCGACC TCGTCTTCAA GGAAAAACGC ACCCCGGCTC TTTGCTGGGT
CCCAGTATGA GTGACAACGA CGATTCTCCA CAGATTGGTA GCAGTTCAAG CCATAGCAAC
GGGGAAGAAA ACGATGGAGT TGGTAATGAA GACGACAAGG CACGTGGCTT TTCGGAGTAT
CAAGCCCTTA GTATCCAGTC GCACACGCTA AGTGAGACCA CAATGGACCC GCTAATGGCT
TCCTTTACTG TACGATCGCA GCAGAGCGAC ACGAATTTGA CGCAGAGCTC GACTTCGCTA
AGTGCGTACA TTAGCGCTGG ATCGACGAGT TTGGAAGGTG CCGAAGCCCG CACCACCGAC
GCTCTGGCCT CCGTTCAATC TCAACGAGCA CCGTGGGCTC CCAAAACATT GTCTGAAAGC
TTGCTGCAAC GTGGCGAAGC CGATAGTGAA CCTTCCGAAT CTATAGGGGA AGGATGGGAA
GACTCTGAAG AAGCGGTAAC CATGGCAAGC CTGGCCATGA GAGGCTACTT GAATCCTTCG
TCGACCCAGC GGAGTCGACC AAACAGGGCC TCTTCGCCTG CCACGGCGGC TACCGAACAG
TCGTCAGCCA CAACGGTCGA TCCGAACGGA GAGGCAACCC AAAATCAACA AAACGGAACG
GAAAGAAAAT CGAGCTCAGG CACGACCACA ACAAAAGTTA CAGCACGAGA GGAGATGCCA
CCTATGGTAA CCCTGTTTCC AAGTGTTCCC CCGCAACCGT CACCGTCGCG AAAGCTTTTG
CCGATGAAGT CGTTATTTTC TCCATGAAAG GCAAAAGCTA TGGAAGGCGT AATGCACCCC
CTATCCTTGA TGCTTCGCTG A
|
|---|
| Protein sequence | MKRRLPIDSV GTGRRNPKKP TEFDHQGNDQ QVELGLQETQ TRAAVAAQRH GRRLNHSEET
AGDDSALSHL PHGSQMSTEP TNGKSYRSSR GELPIMRFQD SEAAAAASSV SASSQSSPTN
QSEAGSNLPG SPMLGARAPL SAGASSRPFR KSLISNLMDL PSESHWEDRV SVERPKSIVR
RARLLCGKVV EAPAVQLTIV TLIVINAILM GVATFDFVTD RPHINRAFET TDRVFLIIFT
IELSLQFIYR SLGLFMDGWL VFDFVIVITS WSLESLQIIR AFRVFRAFRL INRVGPLREL
IMALGTVMPR MYAIGTLLLL IFYVYAVLFT ELFRDLELSE NYFGSLDVAL FSCMQFMTLE
WADTARECME QRSWAWMPFV SFIAITGFIV FNLIVAVVCD AVSVVDQQSR ADKAGNVETD
LMKLHHAQER LQELSETVDD MRTRHEKLQR TILLLGTTLQ SSSAIRPRLQ GKTHPGSLLG
PSMSDNDDSP QIGSSSSHSN GEENDGVGNE DDKARGFSEY QALSIQSHTL SETTMDPLMA
SFTVRSQQSD TNLTQSSTSL SAYISAGSTS LEGAEARTTD ALASVQSQRA PWAPKTLSES
LLQRGEADSE PSESIGEGWE DSEEAVTMAS LAMRGYLNPS STQRSRPNRA SSPATAATEQ
SSATTVDPNG EATQNQQNGT ERKSSSGTTT TKVTAREEMP PMAKAMEGVM HPLSLMLR
|
|---|
| |