Gene PHATRDRAFT_56443 details

Gene Information

• Locus tag: PHATRDRAFT_56443
• Symbol: Sec61alpha
• ID: 7198846
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011695
• Strand: +
• Start bp: 185846
• End bp: 189754
• Gene Length: 3909 bp
• Protein Length: 559 aa
• GC content: 51%
• Product: transport protein Sec61 alpha subunit
• Protein accession: XP_002184983
• Protein GI: 219129623

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCGTTTCAAT TTCCTTGAGA ATACTGGCCG ACGCAGCCGA CGATGGAATG GATTGTCCCA 
CCGGTGCCAC AATTTCTCGT ACAACCTCGG AACAATCAAA TCGCACGTCG CTGATTATTT 
CTTGTCGTCG ATTGAGCGTA ATCAAATCGA CCTTGAGTAA GGAGGGGGAA CCTAGCGGTG 
CCAGAATCGC CGACATTTTG TTGGGTGTTG CTAGAGGAAT ATCCACGACA CTATTCGCGC 
CCATGGCAGC CTTGGCAATA CTGCGCACGT TGTACTCGCG ATCGGCAATG CACGAGGTTG 
GCGAATCGGC AGACGATAGG AAGCGACTTT CGTATCGCAA AACGTTGCCA ATATCTAGTC 
GAGCCTTGTT GTAGGTTGCG TTTCCGCCAA ACAAGGCCAG TCCACACGGT GCCAGGACAT 
CTTTAGTCGT CGATTCAACG GTCCAGAGGC CACTGAACCA GCTAGAGCAA TGGAAGAACG 
ACACACAATC CATAAGATTT ATAAAAACAC GCGCGTCAAT AACACGTTAC GACTCGGGCA 
ACAAACCGTG CCGAGGCTCA AGGATGTCTC GCGGGAGAAC TCACCTTGGA TACGCCACGT 
CCGGTCCTTC CATACCGTAC GGTGGTGCAT TGGCCAGATT TTCCGTCACT CGCGTTTCTA 
GCATTCCTGT TGGTAGATCG GCCGACGGAG GATTCATCAA GGTGGCTGAT GGTGATGATG 
ATTGTCCGTC GAATGCGGCT GCGTCGCTCG GCCAGCGGTA AAAGCAGGAC GACCAAACCA 
GAGTCGCGGC GGTGACGAGA CTGCGTCTTC GCAGAGTATC AAAGCTGTGG ACGATTCCGG 
ACGGTGGATC AACTAAATTC GTAGCGAGGG GAATCACACG CTTTTCCGGA TCAACGTCGG 
GTCGTTCGTG GTGGTGCCGG TGAAGTGGCA CGAGGGCGAG GGGAAAGTTG ACATTTTGGA 
CACACTTTCC GGCGAGGAAA CTCCGAGAGC GTTTCACGCA GAGAAGAAGA GCGATTGTGT 
TGACAACGGA TCTCAACTTT CCCGACTTGA CCATGTCTTC CCCTGGAACG CAGTGTCCTA 
GTAACCGGAG CCTCGCTCGA TGGTTACCAA ATAAGTGTAA GCAAGTCAGA TGTGGACTCG 
TGCTGATTGT TGGAAGGTGT CGATCGCCTC TCGCATCGGT TCTTCGGAGG GCAGATCCAC 
AACTATCTCC GGAGGCGCAC GGACGTCAGT CACGAAAGAA CACGATTCGT GGGAAGCTAT 
TGACGACGAA GGACACGCGC CTCTATCTAA TTCGTATGGT AAATGGTCTG TCGAAAGGTC 
AAAATTCCTG AATGTCTGCG TGCCGCGTGG CAGGATTTCG ACGGACAGAC GGATCGGATC 
CGATCGGCAG CCAGCACTCG AAATGACTTT GTGCCTGCTT TTCCAGGGAA CAAACTGTTA 
CCGCGTCCTC AACTTTGGAG ACAACGCCAG GCACCGCACG CACACACAAT CCCAAACCGT 
TGCGGTCTCC TTCCCTCCCC TCGTTTGGTT TGTTGTGGTT GCACATTAGC TTTCGTTGCC 
ACCATGCGGT TCCTTCATTT GATTCGTCCG GTCATGTGCG TCCTTCCGGA GGTCGCCAGT 
CCGGATCGCA AGGTATGTGG ATCGACGTGC TTGCCTACTC GCAGACGGCT AGCGAGATGC 
CGTGATTCGA GGTGGGAAAA CAGGACCCAG AACCGCACAT TTTCGTAAGA CGACGGACAG 
ACTTCAGTAG ATTTTCTACC AGAGCCTACG ACAGCGGTGG AACCGTCACA CCCAAATGCC 
TTGAAAAGGC CTCCCCGAGA AGCTTTCTCG GACGGCGATT GCACTATTGA GAACGGAGCT 
TTTAGCGCTT CTTTTTCATG CTGTACACAA ATTTCGTATC ATAGAAGCTG CTGGACTTGC 
ATTGTTACTC AGCTGGTAGA GATGTGTTCG ATTGCTGGAG CGTTTCTATT TCTAGTCCAG 
TATATTTGCT CTCCTAAACC ATTTTTACTC GCATTCCAAT TTTCAGATTC CCTTTCGTGA 
AAAGCTTCTT TGGACTACCA TTACGCTCTT TATCTTTTTG GTGTGTTGCC AGATTCCCAT 
CTATGGAGTC CAGTCCGCTA AATCCTCGGA TCCCTTTTAC TGGATGCGTG TCATTCTCGC 
TTCCAACCGC GGTACACTCA TGGAGTTGGG CATCTCGCCC ATTGTTACTT CGGGTCTCGT 
CATGCAGTTG CTTGCCGGTT CTCGTATCAT TGAGGTCGAC TACAACGTCA AGGAGGATCG 
TGCGCTCTTC TCCGGAGCGC AAAAACTCTT TGGTATCCTC ATTACGACGG GAGAAGCGAT 
TGCGTACGTG GTGTCGGGCA TGTACGGAGA CTTGGGTTCC ATCGGAGCGG GTAACGCCAT 
TCTCATTATC GCGCAGCTCT TTTGCGCCGG TCTCATTGTT TTGACACTCG ATGAACTCTT 
GCAAAAGGGC TACGGTCTCG GATCGGGAAT TTCACTCTTT ATCGCCACCA ACATTTGCGA 
AAATATTGTT TGGAAGGCCT TTTCTCCGAC AACCATCAAC ACGGGACGTG GAACCGAGTT 
TGAAGGAGCC ATTATTGCTC TCTTTCATCT TTTGATTACC CGTAGCAACA AGATCCAAGC 
TCTCCGTGAA GCCTTCTACC GACAGAATCT TCCCAACGTG ACGAATCTCT TGGCGACCGT 
CTTGATCTTT GTTATTGTTA TTTACTTTCA AGGCTGGCGG GTCAACCTTC CCGTCAAGTA 
CCAAAAGTAC CGCGGTCAGG AAGGAAACTA CCCCATCAAG CTGTTTTACA CTTCCAACAT 
GCCCATTATC CTTCAAACTG CTCTGGTGTC CAACTTGTAC TTTGTCTCGC AGCTTTTGTA 
CAATCGTGCC CCCACCAACA TTCTCGTCCG CCTCCTCGGA AAATGGCAGG AAGTGGAAGG 
CTCGGCCGGT AACAAGATTC CGGTAGGAGG CATCGCCTAC TACATTTCGC CTCCCCAGAG 
CTTTGCCGAA ATCATTTACG ATCCCTTTCA CGCGGTTTTT TACCTGGTCT TCATCTTGAC 
GGCCTGCGCT CTCTTTTCCA AGACGTGGAT TGAGGTCAGC GGCGCCTCGG CTCGGGATGT 
TGCCAAGCAG TTGCGCGACA ACCAAATGGT CATGAAGGGA CACCGTGATT CGGCACTGAT 
CCACGTGCTG AACCGGTACA TCCCGACTGC CGCCGCTTTT GGTGGTATGT GCATCGGAGC 
GCTTTCCGTC ATTGCCGATT TCATGGGCGC CATTGGTACC GGCACGGGTA TCTTGTTGAG 
CGTCACAATT ATCTTTCAGT TCTACGAAGC CTTTGTTAAA GAGCAGAAGG AAGGGACGGG 
CGCTTTTGGA TTTTAAATCG CGAGGTTTAT TCCGAACAAG CTACTATACA CACTATCATA 
CACATTCTTC CTACACACAC ACACATTCAT GAGAGAGCGA GTCGGCCTTT TCGTGGAATC 
CACAGAGACT TGCTCAGGAC GAGCGCGTAA TTGATTGGCG GTGGAAAGCA ACAATTCTTG 
GTGAACATAC TCGGCACGGT CGCGTCCTGC AAAATAGCGT TGGAGGTGCA TCTGGGGTCG 
GTTCCGTACG GGCTGGTGAT TGTCGTCGTC GTCGTAAGCG AGATACGGCC GCGCGATCAC 
TCCGTCACGT TGTCGAAAGA CACGAGACGG AAACCTCGGG CACAACGCCG CCACTGTCGT 
TGAGTACATT GTTGGATTAT GCTTTTTTAT CACCGCACCT TTACAGCCGA ACTGCGTGAA 
AGCGCTCGAA GCCAGCACGT ACCCGCTGGA TTCCACCCTC TGGTCTCTTT TCTCTCTCTC 
TTGTTTTTTC ATCCACGCAT CCAATTCAAA CACATCACAT AAAAAATAGT AGCTTGCGGT 
TAAAGTCGT 

 

Protein sequence

MVCRKVKIPE CLRAAWQDFD GQTDRIRSAA STRNDFVPAF PGNKLLPRPQ LWRQRQAPHA 
HTIPNRCGLL PSPRLVCCGC TLAFVATMRF LHLIRPVMCV LPEVASPDRK IPFREKLLWT 
TITLFIFLVC CQIPIYGVQS AKSSDPFYWM RVILASNRGT LMELGISPIV TSGLVMQLLA 
GSRIIEVDYN VKEDRALFSG AQKLFGILIT TGEAIAYVVS GMYGDLGSIG AGNAILIIAQ 
LFCAGLIVLT LDELLQKGYG LGSGISLFIA TNICENIVWK AFSPTTINTG RGTEFEGAII 
ALFHLLITRS NKIQALREAF YRQNLPNVTN LLATVLIFVI VIYFQGWRVN LPVKYQKYRG 
QEGNYPIKLF YTSNMPIILQ TALVSNLYFV SQLLYNRAPT NILVRLLGKW QEVEGSAGNK 
IPVGGIAYYI SPPQSFAEII YDPFHAVFYL VFILTACALF SKTWIEVSGA SARDVAKQLR 
DNQMVMKGHR DSALIHVLNR YIPTAAAFGG MCIGALSVIA DFMGAIGTGT GILLSVTIIF 
QFYEAFVKEQ KEGTGAFGF