Gene PHATRDRAFT_55102 details

Gene Information

• Locus tag: PHATRDRAFT_55102
• Symbol: PDS2
• ID: 7198353
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011692
• Strand: +
• Start bp: 265288
• End bp: 267343
• Gene Length: 2056 bp
• Protein Length: 589 aa
• GC content: 52%
• Product: phytoene desaturase
• Protein accession: XP_002184512
• Protein GI: 219128632

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.989776
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTTTCTTGAT ATGAGACGTC AGCCGGGACC TTTTCGGTCG TGTCCGGACA GCCTACGTTG 
TCTCATAGCT GTGCCTTTTT TCAACAGCTC ATCCATATTG GAATTCATGC TCTGACTATG 
TGTGTCTATA AGGATGACAA GTTTGACAGT GAGAAGAAAT CGCTTACCCC ACAATCAGTA 
AGAGGTCGAC ATAAACCATC AAAATGAAGC TTGTGTTCTC GGTGGCAGTC TTAAGTTGCT 
GGAATGCGTG GGCAGAAGCC TTTGCTCCGA ATACGAATGT GCCGTTTCAC CGAATAGCGA 
AAGCACAATC GTCGCTTTCT ATTGTTCAAG CGCCTGACTT CTCTAGCGTC GGCTCGCATC 
TCGAAGCCCA AGCCAATGTC GAGTATTTAA AAAAGCTGGC ACGACCAGAC AAGCCTTTGC 
AAGTTATCGT CGTGGGTGGT GGATTGGCCG GACTGTCCAC CGCCAAACAT CTGGTCGATG 
CGGGACACCG ACCCATCGTT CTGGAAGCGC GCAGCTTGCT CGGCGGAAAA GTCGCGGCGT 
GGAGAGACAC TGACGGGGAT GTCACCGAAA CCGGTTTGCA CGTTTTCTTT GGCGCCTACC 
CTAATGCTCT CACGTTGTTT GACGAACTTA AGATTGCCGA CCGCCTCCAG TGGAAACCGC 
ACCAAATGCT TTTTGCCAAA CCGGGTCGGC CCACGAGGGA GTTTAGCGTC TTTGACTTTC 
CGCCGTTACC GGCACCGCTC AACGCGGCGG TAGCCATTCT GTCCTGTACC GATATGTTGA 
CTTGGCCGGA AAAAATTCGA CTCGGTATTG GTTTGATCCC GGCCTATTTG CAGGGTCAAA 
CTTACGTGGA GAGTCAGGAA CACGTGACGG TACAACAGTG GATGGAGCAA CGGGGGATTC 
CACAATCCGT GACCGATGAA GTTTTTCTGG CCATGTCGAA AGGTGCGAAC ATGGACGTTC 
GAGTACCTCT TTGGAATACT ATTGAATCGA GACATTGCTC ACCAATCTGT CTCTCCTTGT 
TGTAGCGCTT GGTTTCATCG GACCCGAACA ACTCTCGATG CAATGCGTAT TGATTGCCTT 
GAACAGATTT TTGCAAGAAA CTAATGGTTC TCGTATTGCC TTTCTGGACG GTAGCCCAAC 
GGAGCGACTG TGTGAGCCGT TGAAGGAGTA CATCGAAGCT CGTGGTGGAC TCGTCCGCAC 
CAATGTTCCG GTCAAACGCA TTCTCACCAA CCTGGACGAA AACGATTCAG TCGCTGGATT 
GTTGCTCAAG GGCGGCGAAG TCGTTTCGGG TGATGCGTAC GTTAACGCCA TGCCGGTAGA 
CGCCTTGAAA AAACTGACTC CCGAACCGTG GCGCAAAATG GAGTACTTTC AACGAATGCA 
AAAACTGCGC GGCGTACCGG TGATGAATTT GCATCTTTGG TTCGATCGGA AACTGTCAAC 
CGTCGACAAT TTGATTTTCA GTCGATCGCC ATTACTGTCC GTCTATGCTG ACATGAGCGA 
AGCATGCGAG GGATATGCTA GCAAGCACGT GTCCATGCTG GAATTGGTCT TGGCCCCGGC 
CGCCAAGTAC ATGACCAAGT CGGATGACGA AATCTTACAA GCGACCATGC TCGAACTGGA 
ACGACTATTT CCCCAAGAAA TCAAGGCTGA CGGTAGTTTG GCGGCGGTTA CCAAGTTTAC 
CCTCGTGCGC ACACCCACCT CCGTATACGA AACCTTGCCG GGAATGGAAG CAGCCCGACC 
CACCCAAAAA TCTCCGATAT CCAACTTTTT CTGTGCCGGT GACTTTTCCA GTCAAAAATA 
CTTGGCTAGT ATGGAGGGGG CCATTCTTTC GGGACAATTG GCCGCCAAAG CAGTGGCGGA 
TTCGTACGTG AACGCGGCGT CCAATGACCA ATCAGCGGTG GTGGCACCCC CACGGCAATT 
GACTCCACGA CCGGCCGATC CGTCAGCTGC GGATGCGCAC GACGTTGTAC CGGACCGGAC 
CATGTACGTG GCGAAAGTTG CGTCGCACAT CCCCGCCAGT GTACAAGAAG AATTAGAGGG 
GGCCGTCGTT GTGTAG 

 

Protein sequence

MKLVFSVAVL SCWNAWAEAF APNTNVPFHR IAKAQSSLSI VQAPDFSSVG SHLEAQANVE 
YLKKLARPDK PLQVIVVGGG LAGLSTAKHL VDAGHRPIVL EARSLLGGKV AAWRDTDGDV 
TETGLHVFFG AYPNALTLFD ELKIADRLQW KPHQMLFAKP GRPTREFSVF DFPPLPAPLN 
AAVAILSCTD MLTWPEKIRL GIGLIPAYLQ GQTYVESQEH VTVQQWMEQR GIPQSVTDEV 
FLAMSKALGF IGPEQLSMQC VLIALNRFLQ ETNGSRIAFL DGSPTERLCE PLKEYIEARG 
GLVRTNVPVK RILTNLDEND SVAGLLLKGG EVVSGDAYVN AMPVDALKKL TPEPWRKMEY 
FQRMQKLRGV PVMNLHLWFD RKLSTVDNLI FSRSPLLSVY ADMSEACEGY ASKHVSMLEL 
VLAPAAKYMT KSDDEILQAT MLELERLFPQ EIKADGSLAA VTKFTLVRTP TSVYETLPGM 
EAARPTQKSP ISNFFCAGDF SSQKYLASME GAILSGQLAA KAVADSYVNA ASNDQSAVVA 
PPRQLTPRPA DPSAADAHDV VPDRTMYVAK VASHIPASVQ EELEGAVVV