| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_54800 |
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| Symbol | |
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| ID | 7202950 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011683 |
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| Strand | - |
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| Start bp | 52388 |
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| End bp | 56420 |
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| Gene Length | 4033 bp |
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| Protein Length | 923 aa |
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| Translation table | |
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| GC content | 52% |
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| IMG OID | |
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| Product | carotenoid isomerase-like protein |
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| Protein accession | XP_002182312 |
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| Protein GI | 219124022 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0759229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCCG TCACGCAGAG TCCACCCGTC GAGTTGTCGA CCGACCCTCC CGTCGCACTC
TCCTTGGCCT TGCCTCCATT GTCTCCTACG GCAGACGGCA CGCTTCAACA CCACCACCTC
ACCACCACCG ACGACGAGTC GTCGAGTCCT TGGCCAGTAG CAAGTATTTG TCTGAGCAAT
TAAGCGAGCT AGTGAAAATC ATTCACAGTC ACCGAAAATA CTCCCCGCTT TGTCCCTGTT
AGGTCATGCT GTTAGGTCAT GCAGTCAGGA CGCTCGATCT CGACAGGAAC GCAGTCTGGT
CCTCTAGGAG CTTCCATCGA TGCGTTCCCC GGTTCCGTCT GGTCGTTCCT TTGAATCCGG
GCGTAGCGCG TTGCCAAAAC GCACAGCAGG GCGTCCACTA GCCAGCACGA CGACGAGACC
AAGCCGTCCC CGTCCGCTAG CCGCCATGCC GACGGTTGAC TATAACAATC ACTCAACGAG
ACTTCAATCA ATCAGGCTTT TCAACAGGAA CAAAAAAAAT CCACAAACCG ATAGGTGATC
CGCAGCGTGT TCCGTGGTCA AAACAATTTC AGCGATCCGT TGAATCGCGG GTGGAATCCC
TGGCGGCCCG GGATAAGTTC CCGTCAGGAC AAGTGCGGCG TCGAGTACGT AAAGATGCAC
GGCCAGTACT TCCCTACCAG TGGTAGTGGT TTCTCAACAG GTCCCGTTGG CCAACATGAT
GGCCACGAGC TCGAGCAGCG CTGTGACACT GAACGACAAG GGGGCGGTCA CGTTAACAAG
GGTAACCACG TCGAAGCAAA CGTAGCGACG AGCGTGTTGT GTGCCACCGA GTGCTGGTAA
GACGACGGAC TTACAGGCAC GAAGAGTCCC GTGTCGGGAG CAGTCGTCTT CGTGGCAGGC
CGTGAGCGTC TGGCGTTGGA CGATACGGGG AGACGTGTCA AGCCGAGGCT AGCATCCCAT
ACGATAGCTA AAGACCGCCC CCGCCGTCGA ACAGGGAGCA TTCGTATACT TTGCTTATCT
ACTTACTACT GCTCTACTCG TTTTAGGTAG AGAGAGAGTG TCATGGGGAC GATGCAACAT
CCGAGCGAAC TGTAACCCGT TGGCCGAGGA GGTATCCCCG GTAGTGCGAA CGACACTTTG
GACCGGATGT CCAGAACATT CCTTTTCAAA TTCTTTTTAA ATTCGCCGTT ATTTTTATGT
CAACTTGCGA ACACACGGAT TGCGCCATTT TTCACCGTGT CAAGTTTACC TCACAGAGAA
CCCGAACCCA AAACAGTGTG CGTCGTCGTT TTGCGTAGTC TCCAACGTGA TCCGACCTTT
CAACAAGATG AGGTTTCCGC TTTCCTCGGT GCATTTCGAG GCTGGATTGG TAACGAGGTC
GACCGGCTTT TCGAATGGGC TGCTACGGCT GCTAAGGCAC TGTGTATGGC GAATTGGCAA
GGCAAATCCC GGCTTTTGAA GAAATTTGGC GCTACCGTTC GTCGTCTGGA CAAAGCCTGC
GGTCCATTTG GTTGGACTGC ATGGATCCTT TTCCCATGTC AAACATTGAT GCAGCGCCGG
GATCACTATA CAGTCAGTCG GACAACGCAA AGGGACCACT CTGTTTCCGC ATCAGCGGTA
CGCGATTGGC CGATCCAGAA CTCTCGGTGA CGCCGAATCG TGTCGAGAAC ATTTAAAAAT
GCGAAGCGTG GAGTCAGTCA ACCTAAGCTT CCTCCCGTAG TTCCGTCGCT TTCCCATAAA
ATATCCGAAC ACTAGAAATA AAAAAAGCAA AAACAAATTC CGACGAATGC AGCAGATCAC
GAGCATGATA TCGCCCGAAG CCTTTCTACC TCTGGCCACG ACGTTGCCGA AGATTCCTTT
TTGGATACTC GCACCAGTGC TAATTTGGGT AGGTTTTCTG GTTTGGTTGT TCCACTGGCC
CGCTCGACGA GTCAAACTGC ATCCGCGGCG AGCGAGTCGC TTTCGGCCGG AGCTTGTGCT
GGAAAACGGC AAGCAACGTC GGTTTGACAC CATTGTGATT GGATCCGGAT CGGGAGGTTG
CGCCTGCGCC AACCTGTTGG CCCAATCTGG GCAGCGCGTC CTGATTCTGG AGCAACACAC
CAAAACGGGG GGATGTACCC ATTCCTTTCG CGATCGCGGC TGTGAGTGGG ACACCGGCTT
ACACTACACG TCGGCAGGAA TGGGGCGATC GACCTGCCGA CCGGGTGCCA TCATGCATTT
TATGACGCAA GGTCTGCAGA AGTGGACTCC ACTACAGGAT CCCTACGATG AAGTCATCTT
TCCTCCGGAC GATTTCGTTA AACTTGGCGT CCCGAACGAG TCGTCGTACC GCTTCGTGAG
CGGTGCGGAC GAGACAATTC AAAGCGTTTT GGCCAGTATT GACCCTGAAC ACCGGGAGCT
CGAAAAAAGA GCAAGATTAT ACATGGATTT GTGCACAGAT ATTAACAGTG GCTTTACAGC
ACTCGGAATC TCTCGGGTGT TGCCTTCGTG GATGCACTTT CTCGTGCGGT CCAGGATTGA
TCGTCTCATG AAGTTCGCAG CCATGACTGT CCGAGATGTA CAATACGGAA TGCTCAATCT
GGGGCTGACG ATAGAAGAGC TTCTCAAGGA TGGCTGCCCC CCGGCGCCTG CTGGATCCGA
ACCAGATCCT TCTATTCGTC GCCTAAAGGC TGTCTTGACT CATCCAATTG GCGATTACGC
AGTGCAGCCA CGTGATGCGA CCATGGCGGC ACACGGAGTT ACTATGGCGC ACTATCAAGA
TGGAGCGTGC TACTGCGTTG GTCCGACGCA GCAAATTTCG GTCCGAAGCT CTAGTATGGT
GCGAGAATTT GGCGGTGAGG TATTGACGGA CGCGACCGTT CGAGAAATTA TCCTCGAGCA
CGGACGCGCC GTTGGAGTTC GCGTGAGCAA CACGTCGGCC TTGGCGGAAT GTAAATCCGA
TGCCGAGCGC GCCCAAGTGC CAGTGACCGA GCTCCGGGCG AAAGCGGTGG TATGTGCGAC
TTCAGTATAC AATTTATACA ATAACTTGTT GCCTCAAGAC CTTGCACAAG TAAAGGAGTT
TCAAGATCCG GAAAAACGAA CCATCCAACA GAGCAACGGT CATATTTTCC TCTTTTGCAA
GATCAAAGGG GACCCGACCG AGCTGAAGTT ACCAGCCCAC AATCTGTGGT ATTTCAATTC
TTATGACATT GACGATGCCT TTGAGGCCTA CTTTACCGAT CCTGTTGGTC AGCGGCCCCC
AACAGTCTAT ATGTATGTAT GAAGGAGAGA ACTGTGTAGG GGTGTACAAA CTTGGTAATT
ACTTCTAACT GTCTTTTTGA CTTTTTGCCT TTTAGTGGAT TCCCCTGCAC AAAGGATACA
AGCTGGAAGC AGAGATTTCC GGGAGTAAGC AATTGCATCC TCATTTCAGA TGGTCTTTGG
GAGTGGTTCG AGAAATGGCA AGATAAACCA GTGCACAATA GGGGTTCCGA CTACGAGGAG
TTCAAGGAAA AGCTGAGCAA ACATCTGTTG GAAATCCTCT TCGAGTTTGT ACCAGAAGTG
AAGGATAAGA TTGAATTCAG CTTTCTCGGA ACTCCTTTGT CGGAGCAAAC GTACCTGAAC
TCATTTTGTG CTGGGAGCTA CGGAACGAAG TGTCTTCCTT CTATGTTTGC TAAAAGCAAC
CGCAGGTGGA CAACATCTCC TCACACATCT ATTCCTGGTC TATATCTGGC GGGGTCGGAC
GCGTTTTTGC CTGCAGTTTG CGGTGCCATG TACGGAGGCT GCTTTGGAGC AATTGCAGTT
CTGGGTCATT TGCGAGCCCT GAAGCTGACC TTGGCGTTCA TTGCACACTT TGCTGGGTGT
ATAACAGATG AGGATCCCAA AATTGGCTGG ATCCAAGCTT ATATTCTTGC CTGGAAAAAG
TTTATGAACG ACTGACATGT GAGTGCTAAC ATATTGAAGC ATGTTGTTTC TCTTTGCAGC
TGCTGGTGGA CATTGACTCG AGTAGATCAA TGGAATAGAG CTATCGTTAA TGTTAATTCT
GCTTTTTCAC CTC
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| Protein sequence | MTPVTQSPPV ELSTDPPVAL SLALPPLSPT ADGTLQHHHL TTTDDESSSP WPVIRSVFRG
QNNFSDPLNR GWNPWRPGIS SRQDKCGVEY VKMHGQYFPT SGSGFSTGPV GQHDGHELEQ
RCDTERQGGG HVNKGNHVEA NVATSVLCAT ECCLPHREPE PKTVCVVVLR SLQRDPTFQQ
DEVSAFLGAF RGWIGNEVDR LFEWAATAAK ALCMANWQGK SRLLKKFGAT VRRLDKACGP
FGWTAWILFP CQTLMQRRDH YTRYAIGRSR TLGDAESCFL VWLFHWPARR VKLHPRRASR
FRPELVLENG KQRRFDTIVI GSGSGGCACA NLLAQSGQRV LILEQHTKTG GCTHSFRDRG
CEWDTGLHYT SAGMGRSTCR PGAIMHFMTQ GLQKWTPLQD PYDEVIFPPD DFVKLGVPNE
SSYRFVSGAD ETIQSVLASI DPEHRELEKR ARLYMDLCTD INSGFTALGI SRVLPSWMHF
LVRSRIDRLM KFAAMTVRDV QYGMLNLGLT IEELLKDGCP PAPAGSEPDP SIRRLKAVLT
HPIGDYAVQP RDATMAAHGV TMAHYQDGAC YCVGPTQQIS VRSSSMVREF GGEVLTDATV
REIILEHGRA VGVRVSNTSA LAECKSDAER AQVPVTELRA KAVVCATSVY NLYNNLLPQD
LAQVKEFQDP EKRTIQQSNG HIFLFCKIKG DPTELKLPAH NLWYFNSYDI DDAFEAYFTD
PVGQRPPTVY IGFPCTKDTS WKQRFPGVSN CILISDGLWE WFEKWQDKPV HNRGSDYEEF
KEKLSKHLLE ILFEFVPEVK DKIEFSFLGT PLSEQTYLNS FCAGSYGTKC LPSMFAKSNR
RWTTSPHTSI PGLYLAGSDA FLPAVCGAMY GGCFGAIAVL GHLRALKLTL AFIAHFAGCI
TDEDPKIGWI QAYILAWKKF MND
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