Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_51876 |
Symbol | RAD50 |
ID | 7200598 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011675 |
Strand | - |
Start bp | 425431 |
End bp | 430616 |
Gene Length | 5186 bp |
Protein Length | 1436 aa |
Translation table | |
GC content | 45% |
IMG OID | |
Product | Rad50 DNA repair/recombination protein |
Protein accession | XP_002179845 |
Protein GI | 219118128 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.347937 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TGAAACGGGA CAAAAAGCCA AGGTAGTGTA AAGAAGCCAA AGCATCCAAT CGAAACAGGT AGGAAGGGGT AGTTGATCCG AAGCTGTGAG ATCCGGCCGG ATAGAAGTCG CTTTTCGATC TTACCAAGTG TAGCGATATG GCTTCGGTCA ATAAATTGTC AATTAGGGGT ATTCGATCAT TCTCTCCCGA AGATGCGGAA CAGGTAAGCC ATGACTTAGC TTTTTCAGTC GAGTACGATG CCGACACTCA CGCCAAACTC GATCGGCATA CTCACATCAT TGTCTGTCGA ACAAGGTCGT CGAGTTCTAC TTTCCGTGCA CAATCATTGT CGGGGCAAAC GGATGCGGAA AGTACGTATT ATGCGCGAGA AGACTTTTCT ATTACAATAA TTGTTGTACT CATTGAATTG ATTTGGTTGG CTCGCAGAAC GACAATCATT GAAAGTTTGA AATATGCAGT CACGGGATCG TTCCCGCCGG GCAACAAGGC CGGCCAAGCT TTTGTCCACG ACCCGCGTAC TATTGGACAG CCCCAGGTCA AAGCAAATGT CAAATTGCGC TTTACGTCTC GTTCCGGACA GACCATGGTG GTAGTTCGCT CTATGGAAGT CAATCAAAAG AAGACAGCTA TGACTTTCAA ACAGCTCGAC GGCGTCCTCC GTATGATGGA TCCGAATACG GGGCAGCGCG TTTCACTGTC CCATAAATGC ACCGAATTAG ACAAACAACT ACCAGCACTT TTGGGTGTTT CGAAATCTAT CTTGGAACAC GTCGTCTTTT GTCATCAGGA AGACGCATCC TGGCCTTTAA TGGAAGGGGC AGTTTTGAAA AAGCGCTTTG ACGATATCTT TGATTCGACG CGATATACTA AAGCCTTGGA TGCCTTTCGG AAGACGGAAA AGGAAATGAC TGCCACTGTC AAGGACCTGA AAATCGAATT GGCTGGTTTA AACTCAAGCA AGATCGCGGC CGACGGATTT CGAAAGGATT TGGTAGGTTA CCAGGAAGCT TTGGAAACTT TGGAAGAAGA AAAGCAGCAA GTCGTCGAAG GCATTGCCGA GGCCGATCGC GACATCCAAG TGTATCAAGG GATTGAAGCC AAAATCAACA ATGTGGATGC AAAGATTGAT AGCCTCAAGA ATCAGCAAGC GCAGCTGGTA CAGGTCCGTA TGACTCGGCA ACAAATGCTA GAAGAAGATT TGACCAAGAA ACACTCGCAG CAGGAACTGG AACAGATGTT AGATGACTTT GGGGGGAAAG TCTCGGAGCA ACTAGATCAG CACCAAAAAA TGCAGCAAAG ATATGAAGGT ATGGAAAAGG AGGTAGACAC TTTACGACAC GAGGAAATTC GGTTGAATTC CCTCCTTGGA AAGCTCTCGG CCGAAAAGGA GGCCCATGAA GGCCGCCTAC TGGAGCGGTA TAAAATGATG GAGACCATTG CACAAATGTA CAGCATTGAT TTGCATTCAG TAGAGTTTTC ACAGGGTAGT AAGTCTTTGG CGGCGGCAAC TCTGTCCGCA AGTCTGGCTT CTCAAAATGC ATTCGGAAGT CAAGATGACT TGGATCTTGC AGCCGGTATC ACCTCGAATG ATATGCATAG TTTCTACATA GCTCTCGAGA AAAACGAAGA AGATTTGAGT GGGAAACTCC GAGATTTCCG TGGAGAATCT CAAGCTAGAG ACGACGCTTT GCAAAATGAG CTTGCCACTC TTGGTGGACA ATTGTCTGTG AGCGAAACAG GTGAGTTTTC GTATTAGCGG TATTGTTACT ATACGATTCA TATAGCTTAC GTTAAGCTTT GTTCTATGGC CCAAAGAGCG CGCCAAACTA GCAAGCAGAC GGAATGGTCT GCAAAAAGAG CTCAGCGCTA TCTCGAGTCA AGTTGCCAAA CCATCTTGGA TACGAATGAC TGATGTAAGT AAGCAACTTT CTTTTATCGA TTGAAAAGTC AACGATTTAA ATCTAACACG GTGTTGCGTT TATTTGTAGA TCGAGGATGC TCGCAAGCAT GCCATAAAGT TTGGTATGTT GCCCACCGCA TTTCCATACA TGTGAATTAA TTAATTTTTC GTTTCTCATG AACCTCACTG TTATTTTAGC AAAAAGTCGA GACGAGGCGA ATCAGAATCC TCGACGAAAA GAGATTCCTA CCGAAATCCT TCATTTACAG AGCAAGATTG ACAGTATCAA GCGGACAATT GACCTAGATC AGGAATTGCT TGATCGTCTC CGTAGCACAG CTGAGTCCCA AAACGCCATA AATGTCTTGC AAGAACAAGC TCAAAAAGAC TTGGACGAGT TGAACGAGTC GATCCGCGAT CAGTCCCAAT TACTTCAAAA GTACAACTTT GCTTTCGAAG GACATTTTGC CAAGGAAGAT GACGACAATG GTGAGAAACT TGGAGAAGTA GTCTGTAGTC TAGTATCAGC CATAGGAGGA AAATACGAAT CTTTTCGTGC GGATCTGGAT CGGGCTAGTT GTGATGTCTC GAAGAACGAA AAGGTTGCGT CTGAGAAGGC TGCTCTTCTA GCCAATTCGC AGCGCGCGGC CGCAGGAGTA AGATCCAAGC TCGACGGACT ACATACCACT ATTACAACCG CTCGAAAGCT TACTGTCGAT CTCCAACGCC ACGAGCAAAG CCTTTCATGC ACAGCGCGAG GCGACGAGAA CGACCCGCGC GAGATTATAA AGTACCTTGA GGAACGACTG GATTCAATAG AAGAAGATTC GCCATCTGAG GAGCAACCGA AGGCCATAAA AAAAGTACTG AAGCGTCTGT ATAAGATGGT AAGCATGATT TTTGCGGCGC TCTCAAATTT TTTTCGTGTC TCATCGGCCT CCGTTTAATG GCCACAGTCA AAAATTCGAG ACGCTTCCGG AGAAATAACT GCCATCCGAT GTCCTTGTTG TCGCCAAGAT CTTGGTGGGA GATCTGCAGA GGATATGAAA GCGATGCTTG ACGAATTAAA GGTAGACCCT GCACTTACAG AGATTGACGA GAAGGCCATT GAGCATTATA AGAATTTGAA AGAGACTTAT CAGGGATGGA AAGAACAGGT TGAAAAGATG TCGGATGACC TGCGAGATGT AAAACGTCTT GATAATGAGC TGAGTGATCA CACGAAAGAT GTAGAGAAAT TTGAGAATGA GCTTGGGCGA TATCGTAGAA TGATTGTCGA TGATATAGAG CGTCGAGATG AGGCTACTGT GGCTTTTACT GAGATACGGG AACTGCTCGA TGTTGCAAAA CGTTGGTCTA CCGATGTCGC CCGCATTGTT GGGAAAAAGA TGCAGATCAA TCAGAAAACT ATGGATTTGC CCTTCAGTGG AAATGACGGA CCAAGACGCG ACCTCGAAAC AGTGGAGCGT GAAATGACGA GAAACATCAA AGAAAAAGAT ACCTTGATGC TAAAGATTAA CGATTTGAAT AGAGAGATGA TGAACTTAAA CAACGAGGTG TCAGATCTCG CAACGAAGGT ACGCTTTCCC CGGCCCGCAT GTAGCAGAAT GATGGAAAAG GCGAACTAAC AATTACGTCT TCAATCATTA AGGCAGCGAA TACTGACAAA GCTCTCCGCG ACAAGGAGGC GAAATATGTC GAATCGCAAC AGGCTGCCGA ACGAAAGATG GAACTCACTC GAGTATTGCA AGAGATTTCG GCTGCTGAAA AAGAGGTAGG CTTCGACGTT GTACTATTTA ACTAACATTG GGCTGCGCCT CAAAATTTAT CTTTTCTGTG TAGATTCAGA AAAGCATGGG GCCTCTTCAT GAAAAGATTA AGGTGAAAGA GGATACGAAG CGCCAACAAC GCTATGCGAC GAATGAACAG GAGCACCATC TCCAGGACGC TTTGAGCCAA TTTCGAAATG ACTTTAATCA ACTTCGTGAA ATTTCGCGTC AGATTGAGGA GCACACATCT TCCGACAAAG GTCAAAAAGA TGTCGATGTT TCCAGCCAGA TGACCAAGGT TCTGGCACTT CGTAACAAAA TGGTCGCAGA ACTTCAAGTT TTAAGGCCGG AACTAGACGG TCTCATGACT GCCGTTAACG ATCAAGAACG ACACAAAAAA CAGCTTAAAG CCAACATTGA TGTCCTCGCA GCCAACAAGC AAATTCAGGA GCTCGAAGAA GGAATTAATA GTTTCCAGGA GGAGCGTGAA TCGATTGATG GAGCCGACAC TGCTTCCGAG CGTCTTTCGA ACGCAAAAAG TACCAAGGAA AAGCAAGCCT CTATGAAGTC CCGCATAGAA GGCCGTTGGC ACGAAATTAT AGAGCAGATT AGGGCAGTCA AGGTAATTCT TTGAGAGTGA CTTTCTTCAA TTTTCTCAGT TCAAATGGTC AACTCATTCT TTTATTTAAG CGGAAACTGT CGTCTCCAGA CTACAAAAAT GTCGACGAGA AGTTCCGCAT CGCTCTAATT GATGTCGAGA CAACTCAGAT CGCATCTGAG GATCTGAAAA AATATGGCAA TGCACTGGAT AAGGTACGTC TTGCTTATAT AGGACCTACC ATCAATACGA GACCATACCT TAACCTCCAA TTTCTGCAGG CAATATTGAA GTTTCACCAC GTGAAAATTG ATGATATCAA CAAAATTGTG CGCGAGCTGT GGTTGTTAAC GTACAAAGGT GAGAGGGGTT GGGTTCAGAG GTAAATTGCA TGTGTTTAAG ATGCTCTATT CTCACGATAC ATCGTCGCAT GCAGGTGAAG ACATTAGTAG CATTGAACTG GTTTCAGGGC AGGAAGCAGG CTCACGCGCT CAAAAGTCGT ATAACTATCG AGTTGTGATG ACGAAAGGTA CTTCCAAGCT TGATATGCGT GGGCGGTGCA GTGCTGGTCA GCGTGTTCTT GCGAGCATTG TGATTCGACT AGCACTGGCG GAGACCTTTT GTATAAATTG TGGTTGTATC GCGTTGGATG AACCAACCGT GAATCTAGAT CATCGTACCA AGAAAGGACT TGCCGTGGCT CTCGCCCAAA TCATTGCATC GCGTTCTCAA CAACGCAACT TTCAGCTCAT TTTGATCACG CACGACGAAG AATTCGTCGC AATGATGAAG ACGGAACTTT CTACTCTGAC TGGATTCTCC ATGCCAGAGA AATATTTTCA AGTGAGACGT GAGCTCGCCT CCGACGGCAA GTACTACTCA AAGATTAGCG CCGTTGATTG GGATGAATTG GTCTAG
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Protein sequence | MASVNKLSIR GIRSFSPEDA EQVSHDLAFS VEYDADTHAK LDRHTHIIVC RTRSSSSTFR AQSLSGQTDA EITGSFPPGN KAGQAFVHDP RTIGQPQVKA NVKLRFTSRS GQTMVVVRSM EVNQKKTAMT FKQLDGVLRM MDPNTGQRVS LSHKCTELDK QLPALLGVSK SILEHVVFCH QEDASWPLME GAVLKKRFDD IFDSTRYTKA LDAFRKTEKE MTATVKDLKI ELAGLNSSKI AADGFRKDLV GYQEALETLE EEKQQVVEGI AEADRDIQVY QGIEAKINNV DAKIDSLKNQ QAQLVQVRMT RQQMLEEDLT KKHSQQELEQ MLDDFGGKVS EQLDQHQKMQ QRYEGMEKEV DTLRHEEIRL NSLLGKLSAE KEAHEGRLLE RYKMMETIAQ MYSIDLHSVE FSQGSKSLAA ATLSASLASQ NAFGSQDDLD LAAGITSNDM HSFYIALEKN EEDLSGKLRD FRGESQARDD ALQNELATLG GQLSLTLSFV LWPKERAKLA SRRNGLQKEL SAISSQVAKP SWIRMTDIED ARKHAIKFAK SRDEANQNPR RKEIPTEILH LQSKIDSIKR TIDLDQELLD RLRSTAESQN AINVLQEQAQ KDLDELNESI RDQSQLLQKY NFAFEGHFAK EDDDNGEKLG EVVCSLVSAI GGKYESFRAD LDRASCDVSK NEKVASEKAA LLANSQRAAA GVRSKLDGLH TTITTARKLT VDLQRHEQSL SCTARGDEND PREIIKYLEE RLDSIEEDSP SEEQPKAIKK VLKRLYKMSK IRDASGEITA IRCPCCRQDL GGRSAEDMKA MLDELKVDPA LTEIDEKAIE HYKNLKETYQ GWKEQVEKMS DDLRDVKRLD NELSDHTKDV EKFENELGRY RRMIVDDIER RDEATVAFTE IRELLDVAKR WSTDVARIVG KKMQINQKTM DLPFSGNDGP RRDLETVERE MTRNIKEKDT LMLKINDLNR EMMNLNNEVS DLATKAANTD KALRDKEAKY VESQQAAERK MELTRVLQEI SAAEKEIQKS MGPLHEKIKV KEDTKRQQRY ATNEQEHHLQ DALSQFRNDF NQLREISRQI EEHTSSDKGQ KDVDVSSQMT KVLALRNKMV AELQVLRPEL DGLMTAVNDQ ERHKKQLKAN IDVLAANKQI QELEEGINSF QEERESIDGA DTASERLSNA KSTKEKQASM KSRIEGRWHE IIEQIRAVKR KLSSPDYKNV DEKFRIALID VETTQIASED LKKYGNALDK AILKFHHVKI DDINKIVREL WLLTYKGEDI SSIELVSGQE AGSRAQKSYN YRVVMTKGTS KLDMRGRCSA GQRVLASIVI RLALAETFCI NCGCIALDEP TVNLDHRTKK GLAVALAQII ASRSQQRNFQ LILITHDEEF VAMMKTELST LTGFSMPEKY FQVRRELASD GKYYSKISAV DWDELV
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