Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG1403 |
Symbol | |
ID | 2551745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | - |
Start bp | 1486263 |
End bp | 1487129 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637150059 |
Product | rhomboid family protein |
Protein accession | NP_905562 |
Protein GI | 34541083 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.327287 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACTC GTTTGATGGT ATTCACGGTC TTGATCTCCT TGTTCGTTTG GCTTTTGCAT GCCTTTCTGT CTCTTTTGGA TGCCGATCCG TATATCGTGG AGCGGTGGCT TTGGTTGGCC CCCGATTTAT ATACCTTTTC GAGACATCCA TGGACGCTAT TCACGTACAT ATGGCTGCAC TCGGATCTAT GGCATCTTTT CTTCAATATG CTGTGGCTCT ATTGGTTCGG ACAGCTTTTC CTGCGCTATC AGAATCCCAG AAGGCTGGTC AGTGTCTATC TGCTTGGCGG ACTGGCCGGA GGATTGCTCT ATGTATTGGC AGTCTTGTTC GCTGACGCCT TTTCATTGGG TTTGTCTCAT TTCCCTCTGA TCGGAGCTTC TGCCAGCGTG ATGGCCATTG TCTTCGGAGT GGCTTTTTAT GCTCGCTGGG AGCGAGTGAA TCTGTTATTC ATAGGTCGGA TCAAGCTGAC GACATTGGCT CTCATCCTTT TTGTATTGGA TGTATTGCTA TTGACGGGGG ATAACTTCGG TGGTCACGTG GCACATATCG GAGGAGCGGC TTTCGGAGTC TTGTTTGCCC TTTCATTGGC CCGAGGCAAG GACATCACGG TTTGGTTTCA GCGACTGCTC GATCGCATGA CCGACTTTTT CAGCTCGCTC TCCGGCCGAA GAAAAGTATG CTCGAAGCCT CGCTTTCGAG TAAGAAGAAC GACCAATCCG GCTGCTAAAA AGAGTGGAAC GGATCCCAAA ATACGAGAAA CAAAGACTTC CATCGATGAG ATCCTCGATA AAATTCGTAT ATCGGGATAT GCATCATTGA CTGCCGAAGA GAAGCGTCAT CTCTTCGACC AAAGCAAGCG TTTATGA
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Protein sequence | MNTRLMVFTV LISLFVWLLH AFLSLLDADP YIVERWLWLA PDLYTFSRHP WTLFTYIWLH SDLWHLFFNM LWLYWFGQLF LRYQNPRRLV SVYLLGGLAG GLLYVLAVLF ADAFSLGLSH FPLIGASASV MAIVFGVAFY ARWERVNLLF IGRIKLTTLA LILFVLDVLL LTGDNFGGHV AHIGGAAFGV LFALSLARGK DITVWFQRLL DRMTDFFSSL SGRRKVCSKP RFRVRRTTNP AAKKSGTDPK IRETKTSIDE ILDKIRISGY ASLTAEEKRH LFDQSKRL
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