| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0754 |
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| Symbol | topA |
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| ID | 2552750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 801083 |
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| End bp | 803449 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637149499 |
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| Product | DNA topoisomerase I |
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| Protein accession | NP_905022 |
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| Protein GI | 34540543 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACT TAGTCATCGT AGAGTCTCCG GCAAAAGCCA AAACGATAGG ACGTTTCCTC
GGTTCGGATT ATACAGTACT CTCGAGTTAC GGACACATCC GCGACCTCAA GCCCAATAAA
TTCAGTGTAG ATATACAAAA CAACTACGAG CCGGAATACG AGATCCCTGC CGATAAACGT
CCGGTAGTCA AGGAACTGAA ATCCCAAGCC GACCGATCGG ATTTCATCTG GCTGGCTTCC
GATGAGGATC GCGAAGGAGA GGCCATCGCA TGGCATTTGT ACGAAGCATT AGGGCTGAAA
AACAAACAGA CCAAGCGAAT TGTATTTCAC GAAATCACCG AGACAGCCAT CAGAGCTGCT
ATCGAAAATC CACGAGATAT AGACATCAAT CTGGTCGATG CCCAACAGGC GAGGCGCGTC
CTCGACCGTA TCGTCGGCTT CGAACTTTCT CCCGTTTTAT GGAGACGTAT TCGTCCTTCT
CTTTCGGCAG GGCGTGTACA GTCCGTTGCA CTGCGTCTTA TCGTTGAGAG AGAGCGTGAG
ATAAATGCTT TCGTGCCGGA AGCATCCTTC CGCTGTACGA TAGAGTTCGT CCTTCCCGAC
GGTAGAATGC TGACGGCGGA ATTGCAGAAA CGATTCAAGA CGAAGGAGGA AGCCCGATAT
TTCTTGGAGC AATGTATGGA TGCCCACTTT CATATAACAG ACGTTACGAA GCGTCCGGGC
AAACGTTCTC CGGCCACTCC TTTTACTACC TCGACGCTCC AGCAGGAAGC AGCCCGAAAA
CTCGGCTACG GTGTGGCACA GACCATGCGT ATCGCTCAGA AGTTGTACGA AGAAGGGCTT
ATCACCTATA TGCGTACAGA CTCTGTGAAT CTGTCGGATA TGGCCCTCGG TGCACTCAAA
AAGGAAATAA CCGAACATTG GGGTGAGCAA TACTACCGGT TCCGCAGGTA CAAGACCAAA
ACCAAAGGGG CACAAGAAGC CCACGAAGCC ATCCGTCCTA CTTATATACA TAGAGCAGAG
ATAGACGGCA CCCCGCAAGA GCAAAAGCTA TATCAACTGA TCCGCCGCAG AACCATTGCT
TCCCAGATGG CGGATGCCAT CCTCGAAAAA ACGACGATAA CAATCGGAAC CGACAAGTTT
GCAGAGACCC TCAGCTCGCA AGGAGAGGTG ATCGTATTCG ACGGGTTCCT CGGAGTCTAT
CGTGAAGATT CGGACGAAGA ACATGGCTCT GCAAATACCG AGGAGCAGCT ATTGCCCTCT
GTCAAAGCCG GCGATACGCT CTCTCTGCAT CATGCAAAAG CAACGGAGAG CTTCACGCAG
CGTCCGGCAC GCTATACGGA GGCCAGCCTC GTTCGTAAAA TGGAGGAGTT GGGCATCGGC
AGGCCATCCA CCTATGCCCC CACTATCCAA ACCATACAGA ATCGCGAATA CGTAGTACGC
GGCGACAAAC CGGGCAAAAC ACGCGAATAC ATCCTGCTGG AATACCACAA GGGGAAAGCC
ATAACGGAGA CGATCAAAAC GGAACTGAAC GGACAGGACC GGAATAAGCT CCTCCCCACT
GATATGGGGC TTGTGGTGAA CGACTTTCTC GTGGCTTCGT TCCCTCAGGT GATCGATTAC
AACTTCACGG CCAAAGTGGA AAAAGAATTT GACCAAATAG CCGAAGGAAA ACTGCAATGG
CAGAAGCAGA TCGGTCGGTT CTACAACAAA TTCCACCCGT TGGTGGCAGA AGCATGCGAG
TTCGATCCCG ACCAGAAGAT CGGTGAAAGA ATGCTGGGTA CGGATCCTGT GACCGGAGAA
TCTGTGGTAG CAAAAATGGG ACGCTACGGA GCGATGGTGC AGAAAGGTCG CACGGATAAG
GAAAACGGTA TCAAGGCGCA GTTTGCCTCG CTCCAGCCGG GACAGTCCAT CGAATCCATC
ACGCTGGAGG AAGCTTTGGA ACTATTCCTC CTGCCCAAGA AACTGGGACA ATATGAGGAT
GCGGATGTAA TGGTAGCCGT AGGACGCTTC GGCCCTTATA TCAAGCATGC AGGCAAGTTT
GTAGGGTTGC CAAAAGATAC CGAACCCCTT TCCGTTTCGC TTGACGATGC CATCAAGTAT
ATCGCCGACA AACGCGAGAA GGAGGAAAAA AGCCTGATCA AAGGATTTGC AGAAGATCCG
GAGATGGAGA TCCGCACAGG GCGTTTCGGC GTTTATATCA AATACAAAGG GAAAAACTAC
AAAGTCCCCA AAACGGTGGA AGACCCGGAG AAACTCACCC TCGAAGAATG TCTGAAATAC
GTGGAAGAGG GAGAGACGAA ACCGGCCAAG GGAAAGAAAA AAGCTCCGGC CAAAAAGACA
TCGGCAAAGA AGACTGCCAA GAAATAA
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| Protein sequence | MKNLVIVESP AKAKTIGRFL GSDYTVLSSY GHIRDLKPNK FSVDIQNNYE PEYEIPADKR
PVVKELKSQA DRSDFIWLAS DEDREGEAIA WHLYEALGLK NKQTKRIVFH EITETAIRAA
IENPRDIDIN LVDAQQARRV LDRIVGFELS PVLWRRIRPS LSAGRVQSVA LRLIVERERE
INAFVPEASF RCTIEFVLPD GRMLTAELQK RFKTKEEARY FLEQCMDAHF HITDVTKRPG
KRSPATPFTT STLQQEAARK LGYGVAQTMR IAQKLYEEGL ITYMRTDSVN LSDMALGALK
KEITEHWGEQ YYRFRRYKTK TKGAQEAHEA IRPTYIHRAE IDGTPQEQKL YQLIRRRTIA
SQMADAILEK TTITIGTDKF AETLSSQGEV IVFDGFLGVY REDSDEEHGS ANTEEQLLPS
VKAGDTLSLH HAKATESFTQ RPARYTEASL VRKMEELGIG RPSTYAPTIQ TIQNREYVVR
GDKPGKTREY ILLEYHKGKA ITETIKTELN GQDRNKLLPT DMGLVVNDFL VASFPQVIDY
NFTAKVEKEF DQIAEGKLQW QKQIGRFYNK FHPLVAEACE FDPDQKIGER MLGTDPVTGE
SVVAKMGRYG AMVQKGRTDK ENGIKAQFAS LQPGQSIESI TLEEALELFL LPKKLGQYED
ADVMVAVGRF GPYIKHAGKF VGLPKDTEPL SVSLDDAIKY IADKREKEEK SLIKGFAEDP
EMEIRTGRFG VYIKYKGKNY KVPKTVEDPE KLTLEECLKY VEEGETKPAK GKKKAPAKKT
SAKKTAKK
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